RchiOBHm_Chr6g0281231

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002933
Physical Location & Seq
Forward (+)
44572369 .. 44573085
717 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25223

Sequence Viewer

Length: 456 bp
ATGTCGGCTTCTCAAACCCTAGGCGGGGTTTCACGCGCCGGCCGCCTCCTCGGCCCCTCCCTCGACAAAATCATCAAGAACGCCGCCTGGCGCAAGCACTCCCATTTGGTCTCCGCCTGCAAATCCGCCCTCGACAAGCTCGACTCCCTCTCCGACTCCCCCCTCAACGATCCCAACTCCCCCATCGTCGGCTTCCTCTTCCCCGACGCCGAGTCCGTCCTCGCCCCCTCCTCCTCGCCGTCGACTCCGCCCACGCCAAGGTCGTCGAGCCCGCCCTCGAATGCGCCTTCAAGCTCTTCTCCCTCGGTCTCTTCCGCGGGCAGATCGACGCCGCCGCCCCCAAGTTCGTCCTCTTCAAGCTCATCGACTCCGTCTGCAAGTGCGGTGGCCTCGGCGACGAGGCGATCGAGCTCGCCGTCCTCAAGGCTCTGCTCGCCGCCGTTAGATCGCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

151

Amino Acids

15.24

Weight (kDa)

10.49

Isoelectric Point (pI)

101.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 242
AccII CGCG 2 cut(s) 36, 317
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 40
AcyI GRCGYC 2 cut(s) 207, 329
AfiI CCNNNNNNNGG 4 cut(s) 24, 25, 188, 258
AgsI TTSAA 2 cut(s) 291, 357
AhdI GACNNNNNGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 4 cut(s) 139, 294, 360, 411
AluI AGCT 4 cut(s) 139, 294, 360, 411
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 115, 313
AlwI GGATC 1 cut(s) 164
AoxI GGCC 3 cut(s) 40, 52, 387
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 3 cut(s) 38, 93, 286
AspS9I GGNCC 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 19
BanII GRGCYC 2 cut(s) 272, 413
Bbv12I GWGCWC 1 cut(s) 413
BccI CCATC 1 cut(s) 191
BceAI ACGGC 4 cut(s) 223, 400, 424, 435
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 115, 313
BfaI CTAG 1 cut(s) 20
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 5 cut(s) 43, 84, 332, 335, 437
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 5 cut(s) 44, 85, 333, 336, 438
Bme1390I CCNGG 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 406
BsaHI GRCGYC 2 cut(s) 207, 329
BsaI GGTCTC 2 cut(s) 115, 313
BsaJI CCNNGG 6 cut(s) 19, 49, 257, 303, 315, 390
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 25, 188, 258
Bse118I RCCGGY 1 cut(s) 38
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 6 cut(s) 19, 49, 257, 303, 315, 390
BseLI CCNNNNNNNGG 4 cut(s) 24, 25, 188, 258
BseRI GAGGAG 3 cut(s) 38, 220, 223
BseX3I CGGCCG 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 36, 317
Bsh1285I CGRYCG 2 cut(s) 43, 407
BshFI GGCC 3 cut(s) 42, 54, 389
BsiEI CGRYCG 2 cut(s) 43, 407
BsiHKAI GWGCWC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 4 cut(s) 24, 25, 188, 258
BsmAI GTCTC 2 cut(s) 115, 313
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 3 cut(s) 42, 54, 389
Bso31I GGTCTC 2 cut(s) 115, 313
Bsp1286I GDGCHC 2 cut(s) 272, 413
Bsp143I GATC 4 cut(s) 169, 323, 404, 445
BspANI GGCC 3 cut(s) 42, 54, 389
BspFNI CGCG 2 cut(s) 36, 317
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 301
BspTNI GGTCTC 2 cut(s) 115, 313
BsrFI RCCGGY 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 6 cut(s) 19, 49, 257, 303, 315, 390
BssMI GATC 4 cut(s) 169, 323, 404, 445
BssNI GRCGYC 2 cut(s) 207, 329
BssT1I CCWWGG 2 cut(s) 19, 257
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 4 cut(s) 203, 301, 316, 358
BstACI GRCGYC 2 cut(s) 207, 329
BstC8I GCNNGC 7 cut(s) 40, 95, 118, 272, 319, 413, 434
BstDSI CCRYGG 1 cut(s) 315
BstFNI CGCG 2 cut(s) 36, 317
BstHHI GCGC 3 cut(s) 38, 93, 286
BstKTI GATC 4 cut(s) 172, 326, 407, 448
BstMAI GTCTC 2 cut(s) 115, 313
BstMBI GATC 4 cut(s) 169, 323, 404, 445
BstMCI CGRYCG 2 cut(s) 43, 407
BstMWI GCNNNNNNNGC 3 cut(s) 42, 51, 433
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 2 cut(s) 36, 317
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 42, 54, 389
BtgI CCRYGG 1 cut(s) 315
Cac8I GCNNGC 7 cut(s) 40, 95, 118, 272, 319, 413, 434
CfoI GCGC 3 cut(s) 38, 93, 286
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 53
Cfr42I CCGCGG 1 cut(s) 318
CseI GACGC 2 cut(s) 215, 337
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
DpnI GATC 4 cut(s) 171, 325, 406, 447
DpnII GATC 4 cut(s) 169, 323, 404, 445
DriI GACNNNNNGTC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 4 cut(s) 203, 301, 316, 358
Eam1105I GACNNNNNGTC 1 cut(s) 211
EarI CTCTTC 4 cut(s) 203, 301, 316, 358
EciI GGCGGA 3 cut(s) 103, 115, 237
Ecl136II GAGCTC 1 cut(s) 411
EclXI CGGCCG 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 19, 257
Eco24I GRGCYC 2 cut(s) 272, 413
Eco31I GGTCTC 2 cut(s) 115, 313
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 19, 257
EcoT38I GRGCYC 2 cut(s) 272, 413
ErhI CCWWGG 2 cut(s) 19, 257
FauI CCCGC 3 cut(s) 17, 279, 310
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 5 cut(s) 43, 84, 332, 335, 437
FriOI GRGCYC 2 cut(s) 272, 413
Fsp4HI GCNGC 5 cut(s) 43, 84, 332, 335, 437
FspBI CTAG 1 cut(s) 20
GlaI GCGC 3 cut(s) 37, 92, 285
GluI GCNGC 5 cut(s) 43, 84, 332, 335, 437
HaeIII GGCC 3 cut(s) 42, 54, 389
HapII CCGG 1 cut(s) 39
HgaI GACGC 2 cut(s) 215, 337
HhaI GCGC 3 cut(s) 38, 93, 286
Hin1I GRCGYC 2 cut(s) 207, 329
Hin6I GCGC 3 cut(s) 36, 91, 284
HinP1I GCGC 3 cut(s) 36, 91, 284
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 5 cut(s) 143, 155, 212, 244, 367
HpaII CCGG 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 243
Hpy99I CGWCG 6 cut(s) 191, 209, 244, 268, 331, 400
HpyAV CCTTC 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 120, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 51, 433
Hsp92I GRCGYC 2 cut(s) 207, 329
HspAI GCGC 3 cut(s) 36, 91, 284
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 4 cut(s) 169, 323, 404, 445
LguI GCTCTTC 1 cut(s) 301
LpnPI CCDG 4 cut(s) 52, 73, 100, 130
MaeI CTAG 1 cut(s) 20
MalI GATC 4 cut(s) 171, 325, 406, 447
MboI GATC 4 cut(s) 169, 323, 404, 445
MboII GAAGA 4 cut(s) 190, 288, 303, 345
MhlI GDGCHC 2 cut(s) 272, 413
MlyI GAGTC 5 cut(s) 137, 149, 221, 238, 361
MmeI TCCRAC 1 cut(s) 177
MroNI GCCGGC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 88
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 2 cut(s) 36, 317
MwoI GCNNNNNNNGC 3 cut(s) 42, 51, 433
NaeI GCCGGC 1 cut(s) 40
NdeII GATC 4 cut(s) 169, 323, 404, 445
NgoMIV GCCGGC 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 3 cut(s) 30, 235, 371
PciSI GCTCTTC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 5 cut(s) 138, 213, 260, 404, 413
PctI GAATGC 1 cut(s) 286
PdiI GCCGGC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 370
PkrI GCNGC 5 cut(s) 44, 85, 333, 336, 438
Ple19I CGATCG 1 cut(s) 407
PleI GAGTC 5 cut(s) 137, 149, 220, 238, 361
PpsI GAGTC 5 cut(s) 137, 149, 220, 238, 361
Psp124BI GAGCTC 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 370
PvuI CGATCG 1 cut(s) 407
SacI GAGCTC 1 cut(s) 413
SacII CCGCGG 1 cut(s) 318
SalI GTCGAC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 301
SatI GCNGC 5 cut(s) 43, 84, 332, 335, 437
Sau3AI GATC 4 cut(s) 169, 323, 404, 445
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 5 cut(s) 137, 149, 221, 238, 361
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 2 cut(s) 272, 413
SetI ASST 5 cut(s) 141, 263, 296, 362, 413
Sfr303I CCGCGG 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 19, 257
TaqI TCGA 9 cut(s) 63, 132, 141, 242, 266, 278, 326, 365, 407
TaqII GACCGA 1 cut(s) 295
TauI GCSGC 5 cut(s) 45, 86, 334, 337, 439
TspGWI ACGGA 2 cut(s) 205, 360
Tth111I GACNNNGTC 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.