Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002933

Physical Location & Seq

Genomic Coordinates Forward (+)

27348079 .. 27348237

Gene Structure 159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGCGCCTCGGACTCTTTCCCCGGGAGATCGACTCCGCCGGCCCCAAGTTCATAATATCCAAGCTCATCGACTCCGTCTGCAAGTACGGCGGCCTCGGCGAGGAGCCAATTGAGCTCACCGTTGTTAGATCACCGTTGGTGGCTATCAGAGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

52

Amino Acids

5.66

Weight (kDa)

6.15

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35380 AT4G35380 AT4G38200 AT4G38200
fragaria_vesca	FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050
malus_domestica	MD05G1143400.v1.1 MD10G1143300.v1.1
prunus_persica	Prupe.8G182200_v2.0.a1 Prupe.8G182200_v2.0.a1 Prupe.8G182200_v2.0.a1
pyrus_communis	pycom05g13800 pycom05g13810 pycom10g12320 pycom10g12330 pycom10g12340
rosa_chinensis	RchiOBHm_Chr6g0281231 RchiOBHm_Chr6g0281241
rosa_laevigata	RLG00000012982
rosa_multiflora	Rmu_co8206512.1_g000001 Rmu_sc0000847.1_g000049 Rmu_sc0027531.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187190
rosa_rugosa	Rorug06G0139900 Rorug06G0140000
rosa_samantha	Rh3BG278700 Rh5AG257900 Rh6AG251800 Rh6BG255200 Rh6CG254600 Rh6DG246400
rosa_wichuraiana	Rw6G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 90
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	64, 115
AluI	AGCT	2 cut(s)	64, 115
Alw21I	GWGCWC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	2 cut(s)	40, 91
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	2 cut(s)	22, 23
AsuHPI	GGTGA	2 cut(s)	109, 123
AvaI	CYCGRG	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	22, 23
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	22, 23
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	43, 105
BmrFI	CCNGG	2 cut(s)	22, 23
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	2 cut(s)	22, 23
BsaJI	CCNNGG	4 cut(s)	7, 20, 21, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	38
BseDI	CCNNGG	4 cut(s)	7, 20, 21, 94
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	42, 93
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	22, 39
BslI	CCNNNNNNNGG	1 cut(s)	100
BsnI	GGCC	2 cut(s)	42, 93
BsoBI	CYCGRG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	27, 128
BspACI	CCGC	2 cut(s)	36, 90
BspANI	GGCC	2 cut(s)	42, 93
BspLI	GGNNCC	2 cut(s)	43, 105
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	4 cut(s)	7, 20, 21, 94
BssMI	GATC	2 cut(s)	27, 128
Bst4CI	ACNGT	2 cut(s)	121, 135
BstC8I	GCNNGC	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	30, 131
BstMBI	GATC	2 cut(s)	27, 128
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 96, 112
BstSCI	CCNGG	2 cut(s)	20, 21
BsuRI	GGCC	2 cut(s)	42, 93
Cac8I	GCNNGC	1 cut(s)	40
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	41
Cfr9I	CCCGGG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	85
CviJI	RGCY	6 cut(s)	42, 64, 93, 106, 115, 143
CviKI_1	RGCY	6 cut(s)	42, 64, 93, 106, 115, 143
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	2 cut(s)	29, 130
DpnII	GATC	2 cut(s)	27, 128
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	117
FaiI	YATR	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	91
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	91
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	42, 93
HapII	CCGG	2 cut(s)	22, 39
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	12, 32, 71
HpaII	CCGG	2 cut(s)	22, 39
HphI	GGTGA	2 cut(s)	109, 123
Hpy188I	TCNGA	2 cut(s)	11, 149
HpyCH4III	ACNGT	2 cut(s)	121, 135
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 96, 112
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	27, 128
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	35, 52
MalI	GATC	2 cut(s)	29, 130
MboI	GATC	2 cut(s)	27, 128
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	6, 26, 65
MnlI	CCTC	4 cut(s)	17, 94, 104, 143
MroNI	GCCGGC	1 cut(s)	38
MspI	CCGG	2 cut(s)	22, 39
MspR9I	CCNGG	2 cut(s)	22, 23
MunI	CAATTG	1 cut(s)	108
MwoI	GCNNNNNNNGC	3 cut(s)	87, 96, 112
NaeI	GCCGGC	1 cut(s)	40
NciI	CCSGG	2 cut(s)	22, 23
NdeII	GATC	2 cut(s)	27, 128
NgoMIV	GCCGGC	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	43, 105
NmeAIII	GCCGAG	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	40
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	3 cut(s)	6, 26, 65
PpsI	GAGTC	3 cut(s)	6, 26, 65
Psp124BI	GAGCTC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	43, 105
PspPI	GGNCC	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	117
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	2 cut(s)	27, 128
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	6, 26, 65
ScrFI	CCNGG	2 cut(s)	22, 23
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	2 cut(s)	66, 117
SmaI	CCCGGG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	36, 90
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	20, 21
TaaI	ACNGT	2 cut(s)	121, 135
TaqI	TCGA	2 cut(s)	30, 69
TasI	AATT	1 cut(s)	108
TauI	GCSGC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	64
TspMI	CCCGGG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	98
XmaI	CCCGGG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.