Rorug06G0139900

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002933
Physical Location & Seq
Reverse (-)
19796324 .. 19796785
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0139900.1

Sequence Viewer

Length: 219 bp
ATGGCAGAACACATTTCTGCTAAAGAGTTGGCAGGACAACCCTTGGTTGCTAAAACTGGAGCTCTCTCTGCCAAAAGTTACTCTTTGAAGACTCGCTCAACTGTGATCAACAATTTTAAAATGGTAGACTCAGCAGAAAGTGATGGCATTGAGAAGGTTGGGTGTCAGGAAGTGTTTATATGCAATAAAGCAAGGTTCTGTTCCAATATGAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

72

Amino Acids

7.81

Weight (kDa)

8.93

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw21I GWGCWC 1 cut(s) 64
AoxI GGCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 1 cut(s) 137
BclI TGATCA 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 61
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 105
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 143
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 130
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 214
CviAII CATG 1 cut(s) 216
CviJI RGCY 2 cut(s) 62, 214
CviKI_1 RGCY 2 cut(s) 62, 214
DdeI CTNAG 1 cut(s) 130
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraI TTTAAA 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 219
FaiI YATR 4 cut(s) 179, 181, 209, 217
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 1 cut(s) 215
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 1 cut(s) 219
HinfI GANTC 2 cut(s) 91, 128
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 130
Hsp92II CATG 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 3 cut(s) 18, 42, 152
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 112
MlyI GAGTC 2 cut(s) 85, 122
MnlI CCTC 1 cut(s) 204
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 219
PleI GAGTC 2 cut(s) 85, 122
PpsI GAGTC 2 cut(s) 85, 122
Psp124BI GAGCTC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 105
SchI GAGTC 2 cut(s) 85, 122
SduI GDGCHC 1 cut(s) 64
SetI ASST 3 cut(s) 64, 159, 197
SgeI CNNG 6 cut(s) 45, 55, 69, 105, 179, 204
Sse9I AATT 1 cut(s) 112
SstI GAGCTC 1 cut(s) 64
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 103
TasI AATT 1 cut(s) 112
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.