Rorug06G0140000

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002933
Physical Location & Seq
Reverse (-)
19796930 .. 19802101
5172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0140000.1

Sequence Viewer

Length: 789 bp
ATGACTCGATTAGTCCATCTTTACGATTGGGAGATGCGAGTTGGTGAACTCGAAATTGAAAACAAACCCTTTCAGGGCGACGTACCGAGCTCTTGCTCGATGAAGGAACTCGTATACTTGATCGTTGGAATAGTACTTTTGCAGGCTAGGTTAGTTGAGGTCGGGCGTACATGGAGTCGAGGCATAGCCAATAGCATTGCTTCCGCGGCCACTTCGGATTTCGTGGTGAAATCCGGGGCGGGTCCTGTCAGAAATACTTGCTTTTGGCGTACCTTCACAGCTGAGGTGATGAAGTCCTTAAATATTCCCAAGGGTACTCGCCGAGTACTTTTCAGGACATTAAATATTGATAGGGGTCTTATGCATAAAAAGGAATTTGACTCAAGCTGGATTCACGGAGGATGGAGCAAAATGGGTAGTAAAGAACACAGACATCAAACTTGTTGCGTCCATGATTCGAGAGTAATCTATTCTCAAAACTCATCTGAAGAGCTGGAAACAAAGCCATTCAGTAGCAGCAAGGATCATGAACAAGATCATACTGAGCTCTCCTGCTGTGAAGAATGCACTTCAAATTATGAGAAAGAAGCTCAGTTGCTCAAATCTAGCCAGCAGAAATTGCTTGCCTGGCTTCAAACACATGGCACCGAAGCCCGTCAAAAGGAAATCGTACCTGTGGAAGGCCTAAAGCTTGATGGCATAAAACCAGGAAATTATTCTGTGCATTGCTTACCTTTAAGGTTGCTTGCTGCTGAAGGAGCACTAACAAGATGCATTCTCATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

262

Amino Acids

29.62

Weight (kDa)

8.34

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 204, 206, 239
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 2 cut(s) 507, 774
AfaI GTAC 7 cut(s) 84, 135, 169, 271, 316, 327, 672
AfiI CCNNNNNNNGG 3 cut(s) 74, 661, 680
AgsI TTSAA 3 cut(s) 59, 573, 635
AjnI CCWGG 2 cut(s) 626, 706
AluBI AGCT 7 cut(s) 90, 281, 387, 493, 547, 590, 691
AluI AGCT 7 cut(s) 90, 281, 387, 493, 547, 590, 691
Alw21I GWGCWC 3 cut(s) 92, 549, 763
AlwI GGATC 1 cut(s) 531
AoxI GGCC 2 cut(s) 207, 682
ApeKI GCWGC 2 cut(s) 516, 749
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 715
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 3 cut(s) 56, 238, 298
AvaII GGWCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 2 cut(s) 92, 549
Bbv12I GWGCWC 3 cut(s) 92, 549, 763
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 528, 736
BccI CCATC 3 cut(s) 24, 396, 689
BciT130I CCWGG 2 cut(s) 628, 708
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 2 cut(s) 147, 606
BisI GCNGC 3 cut(s) 207, 517, 750
BlsI GCNGC 3 cut(s) 208, 518, 751
BmcAI AGTACT 2 cut(s) 135, 327
Bme1390I CCNGG 3 cut(s) 235, 628, 708
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 243, 646
BmrFI CCNGG 3 cut(s) 235, 628, 708
BmsI GCATC 2 cut(s) 24, 761
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 204, 234, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 661, 680
Bse3DI GCAATG 2 cut(s) 195, 724
BseBI CCWGG 2 cut(s) 628, 708
BseDI CCNNGG 3 cut(s) 204, 234, 309
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 3 cut(s) 74, 661, 680
BseMI GCAATG 2 cut(s) 195, 724
BseMII CTCAG 3 cut(s) 273, 534, 605
BseXI GCAGC 2 cut(s) 528, 736
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 209, 684
BshNI GGYRCC 1 cut(s) 644
BsiHKAI GWGCWC 3 cut(s) 92, 549, 763
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 3 cut(s) 74, 661, 680
BsmI GAATGC 2 cut(s) 569, 774
BsnI GGCC 2 cut(s) 209, 684
Bsp1286I GDGCHC 3 cut(s) 92, 549, 763
Bsp143I GATC 3 cut(s) 120, 523, 535
BspACI CCGC 3 cut(s) 204, 206, 239
BspANI GGCC 2 cut(s) 209, 684
BspCNI CTCAG 3 cut(s) 274, 535, 604
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 243, 646
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 644
BsrDI GCAATG 2 cut(s) 195, 724
BssECI CCNNGG 3 cut(s) 204, 234, 309
BssMI GATC 3 cut(s) 120, 523, 535
BssNAI GTATAC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 309
Bst1107I GTATAC 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 628, 708
Bst6I CTCTTC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 619
BstC8I GCNNGC 4 cut(s) 144, 611, 624, 747
BstDEI CTNAG 3 cut(s) 282, 543, 591
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 3 cut(s) 123, 526, 538
BstMBI GATC 3 cut(s) 120, 523, 535
BstMWI GCNNNNNNNGC 4 cut(s) 206, 619, 628, 758
BstNI CCWGG 2 cut(s) 628, 708
BstSCI CCNGG 3 cut(s) 233, 626, 706
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 2 cut(s) 528, 736
BstZ17I GTATAC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 209, 684
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 407
Cac8I GCNNGC 4 cut(s) 144, 611, 624, 747
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 242
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 1 cut(s) 436
Csp6I GTAC 7 cut(s) 83, 134, 168, 270, 315, 326, 671
CviAII CATG 4 cut(s) 171, 452, 527, 641
CviQI GTAC 7 cut(s) 83, 134, 168, 270, 315, 326, 671
DdeI CTNAG 3 cut(s) 282, 543, 591
DpnI GATC 3 cut(s) 122, 525, 537
DpnII GATC 3 cut(s) 120, 523, 535
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 2 cut(s) 90, 547
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 684
Eco24I GRGCYC 2 cut(s) 92, 549
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 2 cut(s) 90, 547
Eco57I CTGAAG 2 cut(s) 507, 774
EcoICRI GAGCTC 2 cut(s) 90, 547
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 626, 706
EcoT14I CCWWGG 1 cut(s) 309
EcoT22I ATGCAT 2 cut(s) 366, 776
EcoT38I GRGCYC 2 cut(s) 92, 549
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 4 cut(s) 174, 455, 530, 644
FatI CATG 4 cut(s) 170, 451, 526, 640
FauI CCCGC 1 cut(s) 232
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 207, 517, 750
FokI GGATG 1 cut(s) 414
FriOI GRGCYC 2 cut(s) 92, 549
Fsp4HI GCNGC 3 cut(s) 207, 517, 750
FspBI CTAG 2 cut(s) 147, 606
GluI GCNGC 3 cut(s) 207, 517, 750
HaeIII GGCC 2 cut(s) 209, 684
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 436
Hin1II CATG 4 cut(s) 174, 455, 530, 644
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 5 cut(s) 4, 175, 380, 391, 455
HpaII CCGG 1 cut(s) 234
HphI GGTGA 3 cut(s) 56, 238, 298
Hpy166II GTNNAC 2 cut(s) 47, 115
Hpy188I TCNGA 3 cut(s) 217, 251, 487
Hpy188III TCNNGA 3 cut(s) 334, 459, 527
Hpy8I GTNNAC 2 cut(s) 47, 115
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 4 cut(s) 97, 283, 674, 749
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 5 cut(s) 142, 364, 567, 724, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 619, 628, 758
HpyF3I CTNAG 3 cut(s) 282, 543, 591
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 4 cut(s) 174, 455, 530, 644
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 3 cut(s) 120, 523, 535
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 405, 758
Lsp1109I GCAGC 2 cut(s) 528, 736
LweI GCATC 2 cut(s) 24, 761
MaeI CTAG 2 cut(s) 147, 606
MaeII ACGT 1 cut(s) 81
MalI GATC 3 cut(s) 122, 525, 537
MboI GATC 3 cut(s) 120, 523, 535
MboII GAAGA 2 cut(s) 500, 572
MhlI GDGCHC 3 cut(s) 92, 549, 763
MluCI AATT 5 cut(s) 54, 374, 574, 617, 712
MlyI GAGTC 2 cut(s) 184, 374
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 151, 173, 277, 392
Mph1103I ATGCAT 2 cut(s) 366, 776
MroXI GAANNNNTTC 1 cut(s) 715
MseI TTAA 3 cut(s) 299, 341, 737
MspA1I CMGCKG 2 cut(s) 206, 281
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 235, 628, 708
Mva1269I GAATGC 2 cut(s) 569, 774
MvaI CCWGG 2 cut(s) 628, 708
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 206, 619, 628, 758
NciI CCSGG 1 cut(s) 235
NdeII GATC 3 cut(s) 120, 523, 535
NlaIII CATG 4 cut(s) 174, 455, 530, 644
NlaIV GGNNCC 2 cut(s) 243, 646
NmeAIII GCCGAG 1 cut(s) 347
NsiI ATGCAT 2 cut(s) 366, 776
PagI TCATGA 1 cut(s) 526
PceI AGGCCT 1 cut(s) 684
PciSI GCTCTTC 1 cut(s) 483
PctI GAATGC 2 cut(s) 569, 774
PdmI GAANNNNTTC 1 cut(s) 715
PfeI GAWTC 2 cut(s) 391, 455
PkrI GCNGC 3 cut(s) 208, 518, 751
PleI GAGTC 2 cut(s) 183, 374
PpsI GAGTC 2 cut(s) 183, 374
PpuMI RGGWCCY 1 cut(s) 242
Psp124BI GAGCTC 2 cut(s) 92, 549
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 626, 706
PspGI CCWGG 2 cut(s) 626, 706
PspN4I GGNNCC 2 cut(s) 243, 646
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 7 cut(s) 84, 135, 169, 271, 316, 327, 672
RsaNI GTAC 7 cut(s) 83, 134, 168, 270, 315, 326, 671
SacI GAGCTC 2 cut(s) 92, 549
SacII CCGCGG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 3 cut(s) 299, 341, 737
SatI GCNGC 3 cut(s) 207, 517, 750
Sau3AI GATC 3 cut(s) 120, 523, 535
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 2 cut(s) 135, 327
SchI GAGTC 2 cut(s) 184, 374
ScrFI CCNGG 3 cut(s) 235, 628, 708
SduI GDGCHC 3 cut(s) 92, 549, 763
SfaNI GCATC 2 cut(s) 24, 761
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 5 cut(s) 54, 374, 574, 617, 712
SseBI AGGCCT 1 cut(s) 684
SsiI CCGC 3 cut(s) 204, 206, 239
SspI AATATT 2 cut(s) 304, 346
SspMI CTAG 2 cut(s) 147, 606
SstI GAGCTC 2 cut(s) 92, 549
StuI AGGCCT 1 cut(s) 684
StyD4I CCNGG 3 cut(s) 233, 626, 706
StyI CCWWGG 1 cut(s) 309
TaiI ACGT 1 cut(s) 84
TaqI TCGA 5 cut(s) 7, 51, 98, 178, 458
TasI AATT 5 cut(s) 54, 374, 574, 617, 712
TatI WGTACW 2 cut(s) 133, 325
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 2 cut(s) 391, 455
Tru1I TTAA 3 cut(s) 299, 341, 737
Tru9I TTAA 3 cut(s) 299, 341, 737
TseI GCWGC 2 cut(s) 516, 749
TspDTI ATGAA 3 cut(s) 116, 305, 543
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 242
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 715
XspI CTAG 2 cut(s) 147, 606
ZrmI AGTACT 2 cut(s) 135, 327
Zsp2I ATGCAT 2 cut(s) 366, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.