Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002933

Physical Location & Seq

Genomic Coordinates Forward (+)

33585087 .. 33585862

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG257900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCAGTCCAAGTGCCGCAATGCCAATGTTAAACAAATCTTACAAAGTCAAAACAAATCAATCAAAAAGACAAATTCAATCCAACAACAAAACAATCATTGGTGTGGAGCTGTCTTTCTTCATTGCTCAACTCAAAAATGTCAATCCCTCGAAAAAATCATCAAGAACGCTGCCTGGCGCAAGCACTCCCATTTGGTATCCGCCTGCGAATCCACCCTCAACAAGCTCGACTCCCTCTCCGAATCTCCCCTCAAAGACCCCAACTCCCCCATCATCAAATTCCTCTTCGCCGACGCCAAGGCCGTCCTTGCCATCGACTCCACCCATGCCAAGGTCGTTGAGTTCCGCCATCGAATGCGCCTTCAAGCTCTTCTCCCTCGGTCTCTTCCACGGCAAGATCGACACTACCGCACCCAAGTTCGTACTCTTCAAGATCATCGACTCCATCTGCAAGTGCGGCTGGCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

156

Amino Acids

18.05

Weight (kDa)

10.42

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35380 AT4G35380 AT4G38200 AT4G38200
fragaria_vesca	FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050
malus_domestica	MD05G1143400.v1.1 MD10G1143300.v1.1
prunus_persica	Prupe.8G182200_v2.0.a1 Prupe.8G182200_v2.0.a1 Prupe.8G182200_v2.0.a1
pyrus_communis	pycom05g13800 pycom05g13810 pycom10g12320 pycom10g12330 pycom10g12340
rosa_chinensis	RchiOBHm_Chr6g0281231 RchiOBHm_Chr6g0281241
rosa_laevigata	RLG00000012982
rosa_multiflora	Rmu_co8206512.1_g000001 Rmu_sc0000847.1_g000049 Rmu_sc0027531.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187190
rosa_rugosa	Rorug06G0139900 Rorug06G0140000
rosa_samantha	Rh3BG278700 Rh5AG257900 Rh6AG251800 Rh6BG255200 Rh6CG254600 Rh6DG246400
rosa_wichuraiana	Rw6G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	16, 201, 346, 409, 457
AcsI	RAATTY	2 cut(s)	73, 278
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	78, 365, 431
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	110, 226, 368
AluI	AGCT	3 cut(s)	110, 226, 368
Alw26I	GTCTC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	73, 278
AspLEI	GCGC	2 cut(s)	180, 360
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	278, 320, 357, 453
BceAI	ACGGC	2 cut(s)	287, 407
BciT130I	CCWGG	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	16, 171, 458
BlsI	GCNGC	3 cut(s)	17, 172, 459
Bme1390I	CCNGG	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	4 cut(s)	297, 330, 377, 389
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 248, 251, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse3DI	GCAATG	2 cut(s)	25, 121
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	4 cut(s)	297, 330, 377, 389
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	2 cut(s)	25, 121
BseXI	GCAGC	1 cut(s)	157
BshFI	GGCC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	397, 433
BspACI	CCGC	5 cut(s)	16, 201, 346, 409, 457
BspANI	GGCC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	387
BsrDI	GCAATG	2 cut(s)	25, 121
BssECI	CCNNGG	4 cut(s)	297, 330, 377, 389
BssMI	GATC	2 cut(s)	397, 433
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	297, 330
Bst2UI	CCWGG	1 cut(s)	175
Bst6I	CTCTTC	4 cut(s)	290, 375, 390, 432
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	182, 205, 462
BstDSI	CCRYGG	1 cut(s)	389
BstHHI	GCGC	2 cut(s)	180, 360
BstKTI	GATC	2 cut(s)	400, 436
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	2 cut(s)	397, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 457
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	389
Cac8I	GCNNGC	3 cut(s)	182, 205, 462
CfoI	GCGC	2 cut(s)	180, 360
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	6 cut(s)	110, 226, 302, 368, 460, 464
CviKI_1	RGCY	6 cut(s)	110, 226, 302, 368, 460, 464
CviQI	GTAC	1 cut(s)	423
DpnI	GATC	2 cut(s)	399, 435
DpnII	GATC	2 cut(s)	397, 433
Eam1104I	CTCTTC	4 cut(s)	290, 375, 390, 432
EarI	CTCTTC	4 cut(s)	290, 375, 390, 432
EciI	GGCGGA	2 cut(s)	190, 335
Eco130I	CCWWGG	2 cut(s)	297, 330
Eco31I	GGTCTC	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	297, 330
ErhI	CCWWGG	2 cut(s)	297, 330
FaeI	CATG	1 cut(s)	329
FaiI	YATR	1 cut(s)	327
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	16, 171, 458
Fsp4HI	GCNGC	3 cut(s)	16, 171, 458
GlaI	GCGC	2 cut(s)	179, 359
GluI	GCNGC	3 cut(s)	16, 171, 458
HaeIII	GGCC	1 cut(s)	302
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	2 cut(s)	180, 360
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	2 cut(s)	178, 358
HinP1I	GCGC	2 cut(s)	178, 358
HinfI	GANTC	5 cut(s)	209, 230, 242, 317, 441
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	163, 431
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	4, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 457
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	2 cut(s)	178, 358
Kzo9I	GATC	2 cut(s)	397, 433
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	160, 187, 217, 446
Lsp1109I	GCAGC	1 cut(s)	157
MalI	GATC	2 cut(s)	399, 435
MboI	GATC	2 cut(s)	397, 433
MboII	GAAGA	5 cut(s)	110, 277, 362, 377, 419
MluCI	AATT	2 cut(s)	73, 278
MlyI	GAGTC	3 cut(s)	224, 311, 435
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	6 cut(s)	158, 227, 245, 260, 293, 387
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	308, 457
NdeII	GATC	2 cut(s)	397, 433
NlaIII	CATG	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 397
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	209, 242
PkrI	GCNGC	3 cut(s)	17, 172, 459
PleI	GAGTC	3 cut(s)	224, 311, 435
PpsI	GAGTC	3 cut(s)	224, 311, 435
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	3 cut(s)	16, 171, 458
Sau3AI	GATC	2 cut(s)	397, 433
SchI	GAGTC	3 cut(s)	224, 311, 435
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	4 cut(s)	112, 228, 336, 370
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	2 cut(s)	73, 278
SsiI	CCGC	5 cut(s)	16, 201, 346, 409, 457
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	2 cut(s)	297, 330
TaqI	TCGA	6 cut(s)	150, 228, 315, 352, 400, 439
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	73, 278
TauI	GCSGC	2 cut(s)	18, 460
TfiI	GAWTC	2 cut(s)	209, 242
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	110
XapI	RAATTY	2 cut(s)	73, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.