Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8206512.1

Orthogroup ID

OG0002933

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 719

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8206512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 719 bp

agatccgccccttatggtcctcctcctgccactaatccagattcttcgtcaatgtcggcttctcaaaccctaggcggggtttcacgcgccggccgcctcctcggcccctccctcgacaaaatcatcaagaacgccgcctggcgcaagcactcccatttggtctccgcctgcaaatccgccctcgacaagctcgactccctctccgactcccccctcaacgaccccaactcccccatcgtcggcttcctcttccccgacgccgagtccgtcctcgcccccctcctcctcgccgtcgactccgcccacgccaaggtcgtcgagcccgccctcgaatgcgccttcaagctcttctccctcggtctcttccgcggccagatcgacgccgccgcccccaaattcgtcctcttcaagctcatcgactccgtctgcaagtgcggcggcctcggcgacgaggcgatcgagctcgccgtcctcaaggctctgctcgccgccgttagatcgccgttagtggcgatcggaggggactgcttggtgagtattgtgaggacttgttacaatgtgtaccttggtggattgaatgggaccaatcagatctgtgccaagtcggttttggctcagattatggtcatcgtcttcaccagagtggaggccgatgctatgtacgtcaccatctccagggtttcggtcagcgaattgctggaatttactgataagaatct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0006996 GO:0007030 GO:0008064 GO:0008092 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010256 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0010639 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016363 GO:0017022 GO:0019222 GO:0019899 GO:0030532 GO:0030832 GO:0030833 GO:0030837 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031333 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0031984 GO:0032268 GO:0032270 GO:0032271 GO:0032272 GO:0032535 GO:0032588 GO:0032878 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034237 GO:0034260 GO:0034399 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0051018 GO:0051020 GO:0051128 GO:0051129 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051346 GO:0051493 GO:0051494 GO:0060049 GO:0060050 GO:0060255 GO:0061041 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0080134 GO:0090066 GO:0090283 GO:0090284 GO:0090303 GO:0098588 GO:0098772 GO:0098791 GO:0110053 GO:0120114 GO:1902903 GO:1902904 GO:1903018 GO:1903020 GO:1903034 GO:1903036 GO:1990904 GO:2000112 GO:2000114

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

240

Amino Acids

25.27

Weight (kDa)

6.98

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35380 AT4G35380 AT4G38200 AT4G38200
fragaria_vesca	FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050 FvH4_2g17050
malus_domestica	MD05G1143400.v1.1 MD10G1143300.v1.1
prunus_persica	Prupe.8G182200_v2.0.a1 Prupe.8G182200_v2.0.a1 Prupe.8G182200_v2.0.a1
pyrus_communis	pycom05g13800 pycom05g13810 pycom10g12320 pycom10g12330 pycom10g12340
rosa_chinensis	RchiOBHm_Chr6g0281231 RchiOBHm_Chr6g0281241
rosa_laevigata	RLG00000012982
rosa_multiflora	Rmu_co8206512.1_g000001 Rmu_sc0000847.1_g000049 Rmu_sc0027531.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187190
rosa_rugosa	Rorug06G0139900 Rorug06G0140000
rosa_samantha	Rh3BG278700 Rh5AG257900 Rh6AG251800 Rh6BG255200 Rh6CG254600 Rh6DG246400
rosa_wichuraiana	Rw6G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	2 cut(s)	87, 369
AcoI	YGGCCR	2 cut(s)	91, 370
AcsI	RAATTY	2 cut(s)	395, 701
AcyI	GRCGYC	2 cut(s)	258, 381
AfaI	GTAC	2 cut(s)	563, 662
AfiI	CCNNNNNNNGG	5 cut(s)	75, 76, 239, 310, 675
AgsI	TTSAA	3 cut(s)	343, 409, 577
AhdI	GACNNNNNGTC	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	137, 674
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	4 cut(s)	190, 346, 412, 463
AluI	AGCT	4 cut(s)	190, 346, 412, 463
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	166, 365
AoxI	GGCC	5 cut(s)	91, 103, 370, 439, 648
ApoI	RAATTY	2 cut(s)	395, 701
AspA2I	CCTAGG	1 cut(s)	70
AspLEI	GCGC	3 cut(s)	89, 144, 338
AspS9I	GGNCC	3 cut(s)	17, 104, 582
AsuHPI	GGTGA	3 cut(s)	544, 628, 658
AvaII	GGWCC	2 cut(s)	17, 582
AvrII	CCTAGG	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	324, 465
BbsI	GAAGAC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	465
BccI	CCATC	2 cut(s)	242, 677
BceAI	ACGGC	4 cut(s)	275, 452, 476, 487
BciT130I	CCWGG	2 cut(s)	139, 676
BcoDI	GTCTC	2 cut(s)	166, 365
BfaI	CTAG	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	591
BisI	GCNGC	8 cut(s)	94, 135, 370, 384, 387, 436, 439, 489
BlnI	CCTAGG	1 cut(s)	70
BlsI	GCNGC	8 cut(s)	95, 136, 371, 385, 388, 437, 440, 490
Bme1390I	CCNGG	2 cut(s)	139, 676
Bme18I	GGWCC	2 cut(s)	17, 582
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	17, 104, 582
BmiI	GGNNCC	2 cut(s)	106, 583
BmrFI	CCNGG	2 cut(s)	139, 676
BmsI	GCATC	1 cut(s)	643
BpiI	GAAGAC	1 cut(s)	625
BpmI	CTGGAG	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	458
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	2 cut(s)	258, 381
BsaI	GGTCTC	2 cut(s)	166, 365
BsaJI	CCNNGG	8 cut(s)	70, 100, 309, 355, 367, 442, 565, 675
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 212, 215, 242
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 76, 239, 310, 675
Bse118I	RCCGGY	1 cut(s)	89
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	2 cut(s)	139, 676
BseDI	CCNNGG	8 cut(s)	70, 100, 309, 355, 367, 442, 565, 675
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	5 cut(s)	75, 76, 239, 310, 675
BseMII	CTCAG	1 cut(s)	629
BseRI	GAGGAG	4 cut(s)	12, 89, 272, 275
BseX3I	CGGCCG	1 cut(s)	91
Bsh1236I	CGCG	2 cut(s)	87, 369
Bsh1285I	CGRYCG	3 cut(s)	94, 459, 516
BshFI	GGCC	5 cut(s)	93, 105, 372, 441, 650
BsiEI	CGRYCG	3 cut(s)	94, 459, 516
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	536, 595
BslI	CCNNNNNNNGG	5 cut(s)	75, 76, 239, 310, 675
BsmAI	GTCTC	2 cut(s)	166, 365
BsmFI	GGGAC	2 cut(s)	536, 595
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	5 cut(s)	93, 105, 372, 441, 650
Bso31I	GGTCTC	2 cut(s)	166, 365
Bsp1286I	GDGCHC	2 cut(s)	324, 465
Bsp143I	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
BspANI	GGCC	5 cut(s)	93, 105, 372, 441, 650
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	87, 369
BspLI	GGNNCC	2 cut(s)	106, 583
BspQI	GCTCTTC	1 cut(s)	353
BspTNI	GGTCTC	2 cut(s)	166, 365
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	8 cut(s)	70, 100, 309, 355, 367, 442, 565, 675
BssMI	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
BssNI	GRCGYC	2 cut(s)	258, 381
BssT1I	CCWWGG	3 cut(s)	70, 309, 565
Bst2UI	CCWGG	2 cut(s)	139, 676
Bst6I	CTCTTC	4 cut(s)	254, 353, 368, 410
BstACI	GRCGYC	2 cut(s)	258, 381
BstC8I	GCNNGC	6 cut(s)	91, 146, 169, 324, 465, 486
BstDEI	CTNAG	1 cut(s)	615
BstDSI	CCRYGG	1 cut(s)	367
BstFNI	CGCG	2 cut(s)	87, 369
BstHHI	GCGC	3 cut(s)	89, 144, 338
BstKTI	GATC	6 cut(s)	5, 378, 459, 500, 516, 594
BstMAI	GTCTC	2 cut(s)	166, 365
BstMBI	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
BstMCI	CGRYCG	3 cut(s)	94, 459, 516
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 102, 435, 444, 485
BstNI	CCWGG	2 cut(s)	139, 676
BstSCI	CCNGG	2 cut(s)	137, 674
BstUI	CGCG	2 cut(s)	87, 369
BstV2I	GAAGAC	1 cut(s)	625
BstX2I	RGATCY	2 cut(s)	2, 591
BstYI	RGATCY	2 cut(s)	2, 591
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	5 cut(s)	93, 105, 372, 441, 650
BtgI	CCRYGG	1 cut(s)	367
Cac8I	GCNNGC	6 cut(s)	91, 146, 169, 324, 465, 486
CfoI	GCGC	3 cut(s)	89, 144, 338
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	3 cut(s)	17, 104, 582
Cfr42I	CCGCGG	1 cut(s)	370
CseI	GACGC	2 cut(s)	266, 389
Csp6I	GTAC	2 cut(s)	562, 661
CviQI	GTAC	2 cut(s)	562, 661
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	6 cut(s)	4, 377, 458, 499, 515, 593
DpnII	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
DriI	GACNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	91, 370
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	4 cut(s)	254, 353, 368, 410
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	4 cut(s)	254, 353, 368, 410
EciI	GGCGGA	3 cut(s)	154, 166, 289
Ecl136II	GAGCTC	1 cut(s)	463
EclXI	CGGCCG	1 cut(s)	91
Eco130I	CCWWGG	3 cut(s)	70, 309, 565
Eco24I	GRGCYC	2 cut(s)	324, 465
Eco31I	GGTCTC	2 cut(s)	166, 365
Eco47I	GGWCC	2 cut(s)	17, 582
Eco52I	CGGCCG	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	137, 674
EcoT14I	CCWWGG	3 cut(s)	70, 309, 565
EcoT38I	GRGCYC	2 cut(s)	324, 465
ErhI	CCWWGG	3 cut(s)	70, 309, 565
FaiI	YATR	3 cut(s)	15, 623, 659
FaqI	GGGAC	2 cut(s)	536, 595
FauI	CCCGC	2 cut(s)	68, 331
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	8 cut(s)	94, 135, 370, 384, 387, 436, 439, 489
FriOI	GRGCYC	2 cut(s)	324, 465
Fsp4HI	GCNGC	8 cut(s)	94, 135, 370, 384, 387, 436, 439, 489
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	3 cut(s)	88, 143, 337
GluI	GCNGC	8 cut(s)	94, 135, 370, 384, 387, 436, 439, 489
GsuI	CTGGAG	1 cut(s)	658
HaeIII	GGCC	5 cut(s)	93, 105, 372, 441, 650
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	2 cut(s)	266, 389
HhaI	GCGC	3 cut(s)	89, 144, 338
Hin1I	GRCGYC	2 cut(s)	258, 381
Hin6I	GCGC	3 cut(s)	87, 142, 336
HinP1I	GCGC	3 cut(s)	87, 142, 336
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	7 cut(s)	41, 194, 206, 263, 296, 419, 715
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	3 cut(s)	544, 628, 658
Hpy166II	GTNNAC	2 cut(s)	295, 562
Hpy188I	TCNGA	4 cut(s)	205, 518, 591, 618
Hpy188III	TCNNGA	2 cut(s)	38, 127
Hpy8I	GTNNAC	2 cut(s)	295, 562
Hpy99I	CGWCG	6 cut(s)	242, 260, 296, 320, 383, 452
HpyAV	CCTTC	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	2 cut(s)	171, 429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 102, 435, 444, 485
HpyF3I	CTNAG	1 cut(s)	615
HpySE526I	ACGT	1 cut(s)	663
Hsp92I	GRCGYC	2 cut(s)	258, 381
HspAI	GCGC	3 cut(s)	87, 142, 336
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	370
Kzo9I	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
LguI	GCTCTTC	1 cut(s)	353
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	551, 664
MalI	GATC	6 cut(s)	4, 377, 458, 499, 515, 593
MboI	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
MboII	GAAGA	6 cut(s)	36, 241, 340, 355, 397, 625
MflI	RGATCY	2 cut(s)	2, 591
MhlI	GDGCHC	2 cut(s)	324, 465
MluCI	AATT	3 cut(s)	395, 692, 701
MlyI	GAGTC	5 cut(s)	188, 200, 272, 290, 413
MmeI	TCCRAC	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	139, 676
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	139, 676
MvnI	CGCG	2 cut(s)	87, 369
MwoI	GCNNNNNNNGC	5 cut(s)	93, 102, 435, 444, 485
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
NgoMIV	GCCGGC	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	106, 583
NmeAIII	GCCGAG	3 cut(s)	81, 286, 423
NmuCI	GTSAC	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	641
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	5 cut(s)	189, 264, 312, 456, 465
PctI	GAATGC	1 cut(s)	338
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	41, 715
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	8 cut(s)	95, 136, 371, 385, 388, 437, 440, 490
Ple19I	CGATCG	2 cut(s)	459, 516
PleI	GAGTC	5 cut(s)	188, 200, 271, 290, 413
PpsI	GAGTC	5 cut(s)	188, 200, 271, 290, 413
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	137, 674
PspGI	CCWGG	2 cut(s)	137, 674
PspN4I	GGNNCC	2 cut(s)	106, 583
PspPI	GGNCC	3 cut(s)	17, 104, 582
PsuI	RGATCY	2 cut(s)	2, 591
PsyI	GACNNNGTC	1 cut(s)	422
PvuI	CGATCG	2 cut(s)	459, 516
RsaI	GTAC	2 cut(s)	563, 662
RsaNI	GTAC	2 cut(s)	562, 661
RseI	CAYNNNNRTG	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	465
SacII	CCGCGG	1 cut(s)	370
SalI	GTCGAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	353
SatI	GCNGC	8 cut(s)	94, 135, 370, 384, 387, 436, 439, 489
Sau3AI	GATC	6 cut(s)	2, 375, 456, 497, 513, 591
Sau96I	GGNCC	3 cut(s)	17, 104, 582
SchI	GAGTC	5 cut(s)	188, 200, 272, 290, 413
ScrFI	CCNGG	2 cut(s)	139, 676
SduI	GDGCHC	2 cut(s)	324, 465
SetI	ASST	7 cut(s)	192, 315, 348, 414, 465, 567, 666
SfaNI	GCATC	1 cut(s)	643
Sfr303I	CCGCGG	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	370
SinI	GGWCC	2 cut(s)	17, 582
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	395, 692, 701
SspMI	CTAG	1 cut(s)	71
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	137, 674
StyI	CCWWGG	3 cut(s)	70, 309, 565
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	9 cut(s)	114, 183, 192, 294, 318, 330, 378, 417, 459
TaqII	GACCGA	2 cut(s)	347, 673
TasI	AATT	3 cut(s)	395, 692, 701
TauI	GCSGC	8 cut(s)	96, 137, 372, 386, 389, 438, 441, 491
TfiI	GAWTC	2 cut(s)	41, 715
TseFI	GTSAC	1 cut(s)	664
Tsp45I	GTSAC	1 cut(s)	664
TspGWI	ACGGA	2 cut(s)	256, 412
Tth111I	GACNNNGTC	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	17, 582
XapI	RAATTY	2 cut(s)	395, 701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	70
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.