RchiOBHm_Chr6g0308911

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005176
Physical Location & Seq
Reverse (-)
66919423 .. 66920532
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27779

Sequence Viewer

Length: 414 bp
ATGGCGTTGTTGGTAACCGGGACCGAGACTGATTCAACGACATTAGAATGGGCAATGTCACCATTGTTGAACCATCCTGATCAGTTGGATCAAATCAGAGCTAAGATTGACTTCAAGGTCGGACAAGGGCGTCTATTGGATGAGCAAGATTTGCCAAATCTGCATTACTTACAAATTGTGATCAATGAGACACTGCGCTTCTACCCTCCCGTTATGCTTTTAGGGGTTCTTGATGTTGTCCAGATGGCTGGCCTAGCCAACTGGGTTATTGGACTGGTGCTAGGAAGCTTGATTCAGTCATTTGAATGGGAGAGGACTAAAGTGGACATGAGTGAGGGTTTAGGCCTTACCATGCCCAAGATCAGGCCATTGGAAGCCTTGTGCAAGCCACGCCTTTTGATGCAGAGGTTTTAA

Protein Analysis

137

Amino Acids

15.53

Weight (kDa)

5.08

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 72 2.6e-17 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 116, 129
AclWI GGATC 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 4 cut(s) 36, 70, 115, 305
AluBI AGCT 2 cut(s) 101, 288
AluI AGCT 2 cut(s) 101, 288
Alw26I GTCTC 2 cut(s) 20, 182
AlwI GGATC 1 cut(s) 96
AoxI GGCC 3 cut(s) 250, 343, 365
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 21
BccI CCATC 2 cut(s) 81, 238
BclI TGATCA 2 cut(s) 79, 180
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 20, 182
BfaI CTAG 2 cut(s) 254, 281
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 19
BmrI ACTGGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 390
BmuI ACTGGG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 2 cut(s) 266, 279
Bse3DI GCAATG 1 cut(s) 60
BseGI GGATG 2 cut(s) 73, 145
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 266, 279
BshFI GGCC 3 cut(s) 252, 345, 367
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 20, 182
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 3 cut(s) 252, 345, 367
Bsp143I GATC 4 cut(s) 79, 88, 180, 360
BspANI GGCC 3 cut(s) 252, 345, 367
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 2 cut(s) 266, 279
BssMI GATC 4 cut(s) 79, 88, 180, 360
BssNI GRCGYC 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 130
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 250, 386
BstDEI CTNAG 1 cut(s) 102
BstEII GGTNACC 1 cut(s) 13
BstF5I GGATG 2 cut(s) 73, 145
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 4 cut(s) 82, 91, 183, 363
BstMAI GTCTC 2 cut(s) 20, 182
BstMBI GATC 4 cut(s) 79, 88, 180, 360
BstMWI GCNNNNNNNGC 4 cut(s) 151, 160, 254, 390
BstPI GGTNACC 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 17
BstXI CCANNNNNNTGG 1 cut(s) 248
BsuRI GGCC 3 cut(s) 252, 345, 367
BtsCI GGATG 2 cut(s) 73, 145
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 250, 386
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 119
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 2 cut(s) 328, 352
CviJI RGCY 9 cut(s) 101, 248, 252, 257, 288, 345, 367, 377, 388
CviKI_1 RGCY 9 cut(s) 101, 248, 252, 257, 288, 345, 367, 377, 388
DdeI CTNAG 1 cut(s) 102
DpnI GATC 4 cut(s) 81, 90, 182, 362
DpnII GATC 4 cut(s) 79, 88, 180, 360
DrdI GACNNNNNNGTC 2 cut(s) 116, 129
DseDI GACNNNNNNGTC 2 cut(s) 116, 129
Eco147I AGGCCT 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 13
EcoO65I GGTNACC 1 cut(s) 13
FaeI CATG 2 cut(s) 331, 355
FaiI YATR 3 cut(s) 215, 329, 353
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 1 cut(s) 34
FatI CATG 2 cut(s) 327, 351
FbaI TGATCA 2 cut(s) 79, 180
FokI GGATG 2 cut(s) 60, 152
FspBI CTAG 2 cut(s) 254, 281
GlaI GCGC 1 cut(s) 197
HaeIII GGCC 3 cut(s) 252, 345, 367
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 2 cut(s) 331, 355
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 2 cut(s) 32, 292
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 98, 122
Hpy188III TCNNGA 3 cut(s) 77, 230, 241
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 163, 384, 403
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 160, 254, 390
HpyF3I CTNAG 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 2 cut(s) 331, 355
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 2 cut(s) 79, 180
Kzo9I GATC 4 cut(s) 79, 88, 180, 360
LpnPI CCDG 7 cut(s) 31, 90, 234, 247, 254, 260, 349
LweI GCATC 1 cut(s) 390
MaeI CTAG 2 cut(s) 254, 281
MaeIII GTNAC 2 cut(s) 13, 57
MalI GATC 4 cut(s) 81, 90, 182, 362
MboI GATC 4 cut(s) 79, 88, 180, 360
MluCI AATT 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 66, 100
MnlI CCTC 4 cut(s) 216, 306, 328, 399
MseI TTAA 1 cut(s) 412
MslI CAYNNNNRTG 2 cut(s) 46, 304
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 19
MwoI GCNNNNNNNGC 4 cut(s) 151, 160, 254, 390
NciI CCSGG 1 cut(s) 19
NdeII GATC 4 cut(s) 79, 88, 180, 360
NlaIII CATG 2 cut(s) 331, 355
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 57
PceI AGGCCT 1 cut(s) 345
PfeI GAWTC 2 cut(s) 32, 292
PspEI GGTNACC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 21
RseI CAYNNNNRTG 2 cut(s) 46, 304
SaqAI TTAA 1 cut(s) 412
Sau3AI GATC 4 cut(s) 79, 88, 180, 360
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 19
SetI ASST 4 cut(s) 103, 120, 290, 410
SfaNI GCATC 1 cut(s) 390
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 46, 304
Sse9I AATT 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 345
SspMI CTAG 2 cut(s) 254, 281
StuI AGGCCT 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 17
TaqII GACCGA 1 cut(s) 38
TasI AATT 1 cut(s) 174
TfiI GAWTC 2 cut(s) 32, 292
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 21
XspI CTAG 2 cut(s) 254, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.