Rorug06G0369200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005176
Physical Location & Seq
Reverse (-)
51628350 .. 51628580
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0369200.1

Sequence Viewer

Length: 231 bp
ATGCCAAAGTTCGGAGAATGGGACGTCAGTGATCCAGCATCAGCAGAGGGATTCACAGTAATCTTCAACAAGCTGGCAAGGACTGAGGAAAAGACTGGTGGCAGACCTGAGTCACCAGCAGAGGATGACTGCACATATAAGCATGGAGCAGTTCTCGGAAAGCCTACCATTGTAAGTTGTACTTGCTTACCTTACAGTTACTCTGGTTTGCTTAATATGTTTGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

76

Amino Acids

8.25

Weight (kDa)

4.72

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 2 - 26 1.8e-14 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
AclWI GGATC 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 181
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 105
BmsI GCATC 2 cut(s) 47, 214
BoxI GACNNNNGTC 1 cut(s) 109
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BsaHI GRCGYC 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 75, 99
BseNI ACTGG 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 31
BspCNI CTCAG 2 cut(s) 76, 100
BspPI GGATC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 31
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 58, 197
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 84, 108
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstPAI GACNNNNGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 73, 163
CviKI_1 RGCY 2 cut(s) 73, 163
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 2 cut(s) 84, 108
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
FaeI CATG 1 cut(s) 146
FaiI YATR 4 cut(s) 136, 138, 144, 218
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 142
FokI GGATG 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 1 cut(s) 146
HinfI GANTC 2 cut(s) 51, 110
HphI GGTGA 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 14, 158
HpyCH4III ACNGT 2 cut(s) 58, 197
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 84, 108
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 6 cut(s) 48, 59, 81, 120, 129, 189
LweI GCATC 2 cut(s) 47, 214
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 111, 197
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 55
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 3 cut(s) 40, 79, 115
MseI TTAA 2 cut(s) 213, 229
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 51
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 109
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 213, 229
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 119
SetI ASST 4 cut(s) 27, 75, 109, 193
SfaNI GCATC 2 cut(s) 47, 214
TaaI ACNGT 2 cut(s) 58, 197
TaiI ACGT 1 cut(s) 27
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 2 cut(s) 213, 229
Tru9I TTAA 2 cut(s) 213, 229
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspRI CASTG 1 cut(s) 34
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.