Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470555.1

Orthogroup ID

OG0005176

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 746

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470555.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 361 bp

atgcccattcttgtcctacatcacgataacttgttgcgtgagcaaatagaacccgagctctacactgacgagatcatcaaaggcatcattctggcattgttggtggttgggactgagactgattcaacgacattagaatgggcaatgtcactattgttgaaccatccagatcagttggatcaagtcagagttgagattgacttcaaggtcggacaagggcgtttgttggatgagcaagacttgccaaatctgaattacttacaaaatgtgatcaatgagacactgcacttgtaccctcctgttccgcttttaggcctcgtttgtttggcggatttgaggacttgggaaaggaaaggtattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00905 ko00943 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00905 map00943 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

120

Amino Acids

13.74

Weight (kDa)

4.5

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005176)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33580 FvH4_2g33630 FvH4_2g33640
malus_domestica	MD08G1091500.v1.1 MD15G1075400.v1.1 MD15G1075500.v1.1
prunus_persica	Prupe.1G428700_v2.0.a1
pyrus_communis	pycom08g07380 pycom15g07050 pycom15g07060 pycom15g07070
rosa_chinensis	RchiOBHm_Chr6g0251291 RchiOBHm_Chr6g0308911 RchiOBHm_Chr6g0308921 RchiOBHm_Chr6g0308931
rosa_laevigata	RLG00000010602 RLG00000010604 RLG00000010605
rosa_multiflora	Rmu_co8379885.1_g000001 Rmu_co8470555.1_g000001 Rmu_sc0004046.1_g000020 Rmu_sc0004046.1_g000023 Rmu_ssc0000331.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159800
rosa_rugosa	Rorug06G0369200
rosa_samantha	Rh6AG480800 Rh6AG481000 Rh6DG481200 Rh6DG481300
rosa_wichuraiana	Rw6G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AciI	CCGC	2 cut(s)	305, 329
AclWI	GGATC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	3 cut(s)	126, 160, 205
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	110, 272
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	1 cut(s)	171
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	110, 272
BmeT110I	CYCGRG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	163, 235
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	2 cut(s)	110, 272
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	72, 169, 178, 270
BspACI	CCGC	2 cut(s)	305, 329
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	106
BspPI	GGATC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	4 cut(s)	72, 169, 178, 270
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	163, 235
BstKTI	GATC	4 cut(s)	75, 172, 181, 273
BstMAI	GTCTC	2 cut(s)	110, 272
BstMBI	GATC	4 cut(s)	72, 169, 178, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	163, 235
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	63, 281
Csp6I	GTAC	1 cut(s)	292
CviJI	RGCY	2 cut(s)	58, 315
CviKI_1	RGCY	2 cut(s)	58, 315
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	4 cut(s)	74, 171, 180, 272
DpnII	GATC	4 cut(s)	72, 169, 178, 270
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
FaqI	GGGAC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	270
FokI	GGATG	2 cut(s)	150, 242
FriOI	GRGCYC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	315
HinfI	GANTC	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	188, 212, 252
Hpy188III	TCNNGA	2 cut(s)	23, 167
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	72, 169, 178, 270
LpnPI	CCDG	3 cut(s)	77, 180, 312
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	4 cut(s)	74, 171, 180, 272
MboI	GATC	4 cut(s)	72, 169, 178, 270
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	253
MmeI	TCCRAC	3 cut(s)	156, 190, 207
MnlI	CCTC	3 cut(s)	306, 326, 330
MslI	CAYNNNNRTG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	241
NdeII	GATC	4 cut(s)	72, 169, 178, 270
NmuCI	GTSAC	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	60
Sau3AI	GATC	4 cut(s)	72, 169, 178, 270
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	3 cut(s)	60, 210, 358
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	253
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	2 cut(s)	305, 329
SstI	GAGCTC	1 cut(s)	60
StuI	AGGCCT	1 cut(s)	315
TasI	AATT	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	2 cut(s)	70, 288
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspRI	CASTG	2 cut(s)	70, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.