Rh6DG481200

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005176
Physical Location & Seq
Reverse (-)
64539393 .. 64541892
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG481200.1

Sequence Viewer

Length: 1029 bp
ATGGGAGATTCACTATGGTTCAGTGCTTTAGCTTTCATCATCTTCATCACTCTCATATACAAGCTCTTCATATCCAATAGACAAAAATACCACAACCTTCCCCCAAGCCCGCCCTCACTTCCGATCATCGGCCACCTCCATCTCCTAAAACAGCCAGCTCACCGAACCCTCCAAGCTCTCTCGGAAAACTACGGCAAAGTCCTCCTCCTCCGGTGGGGCTCACGTAAAGTCCTCCTCCTCACCTCCCCTTCCGCCGCAGAAGAATGCTTCACCAAAAACGACATCGTCTTCACCAATCGCCCCCGCTTGTTGGGCGGGAAAGTCTTCCACTACGACTACACCACCGTCTCCTTCGCACCCTACGGCGACCTCTGGCGCAACATCCGCCGCGTCATGACGCTCGAGCTCTTCTCTTCCTCTCGTCTCGCGGCGTTTCAAACCGTCAGACAGGAAGAAGTCCGGGTGGTGCTGGATCAGATCATGAGGAGAAGCAGCAACGATAATGGGATGAGAAAGGTGGATCTAAAGACCAAGTTCTTGGAACTCTCGTTCAATGCGATGACGATGACGATGGTGGGGAGGAGGTTCTACGGCGAAGATGTGGTGGACCGGGCCGAGGCTAAGAATCTCAGGGAGGTCATTAGGGAAGGTGTGGAGCTATCTGCATCGACAAACTTGGGGGACTTTTTGCCGTTCATGCAGTGGATGGATGTTACCGGATTGGAGAAGAAGATGGTGGGGTTGATGCGGAGGATGGACAAGTTCTTGCAGGGTTTGCTAGACGAGCGGCGGAAAATCATGGCAGTCGAGTCTGACGGTATAGATCAGGTTAAGAGTAAGTTGATGATTGATAACTTATTGTCACTGCAAGAAACAGAACAGAAATACTACACCGACGATATCATCAAGGGCATCATTATGGTACGTCACTGGCTTTCATTAATTTCTTATCTGAAACGTAGTGGTGGTGAGAAACTTGAATTCCCACCTTTGACTATCTTTATTTACCTACTGCATGCAAGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

342

Amino Acids

39.6

Weight (kDa)

9.53

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 303 4.2e-26 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 787
AccII CGCG 2 cut(s) 390, 428
AclWI GGATC 2 cut(s) 480, 528
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 980
AfaI GTAC 1 cut(s) 924
AfiI CCNNNNNNNGG 4 cut(s) 128, 214, 310, 616
AgsI TTSAA 3 cut(s) 437, 553, 980
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 6 cut(s) 32, 64, 158, 176, 406, 658
AluI AGCT 6 cut(s) 32, 64, 158, 176, 406, 658
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 352, 428
AlwI GGATC 2 cut(s) 480, 528
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 2 cut(s) 130, 612
ApeKI GCWGC 1 cut(s) 492
ApoI RAATTY 1 cut(s) 980
AseI ATTAAT 1 cut(s) 941
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 607, 612
AsuC2I CCSGG 2 cut(s) 461, 611
AsuHPI GGTGA 5 cut(s) 152, 232, 262, 283, 980
AvaI CYCGRG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 607
BanII GRGCYC 2 cut(s) 221, 408
BbsI GAAGAC 2 cut(s) 280, 316
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 504
BccI CCATC 5 cut(s) 147, 565, 700, 727, 748
BceAI ACGGC 4 cut(s) 208, 379, 607, 676
BcnI CCSGG 2 cut(s) 461, 611
BcoDI GTCTC 2 cut(s) 352, 428
BfaI CTAG 1 cut(s) 779
BisI GCNGC 5 cut(s) 255, 388, 429, 493, 788
BlsI GCNGC 5 cut(s) 256, 389, 430, 494, 789
Bme1390I CCNGG 2 cut(s) 461, 611
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 607, 612
BmrFI CCNGG 2 cut(s) 461, 611
BmsI GCATC 3 cut(s) 674, 735, 921
BpiI GAAGAC 2 cut(s) 280, 316
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpuMI CCSGG 2 cut(s) 461, 611
BsaAI YACGTR 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 615
BsaWI WCCGGW 2 cut(s) 210, 716
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 214, 310, 616
Bse1I ACTGG 1 cut(s) 935
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 5 cut(s) 381, 513, 711, 715, 759
BseLI CCNNNNNNNGG 4 cut(s) 128, 214, 310, 616
BseMII CTCAG 1 cut(s) 643
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 6 cut(s) 194, 197, 224, 227, 499, 595
BseXI GCAGC 1 cut(s) 504
Bsh1236I CGCG 2 cut(s) 390, 428
BshFI GGCC 2 cut(s) 132, 614
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 4 cut(s) 211, 460, 610, 717
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 4 cut(s) 128, 214, 310, 616
BsmAI GTCTC 2 cut(s) 352, 428
BsmBI CGTCTC 2 cut(s) 352, 428
BsmFI GGGAC 1 cut(s) 695
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 2 cut(s) 132, 614
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 221, 408
Bsp143I GATC 5 cut(s) 123, 472, 477, 520, 823
BspANI GGCC 2 cut(s) 132, 614
BspCNI CTCAG 1 cut(s) 642
BspFNI CGCG 2 cut(s) 390, 428
BspHI TCATGA 2 cut(s) 393, 480
BspPI GGATC 2 cut(s) 480, 528
BspQI GCTCTTC 2 cut(s) 71, 413
BsrBI CCGCTC 1 cut(s) 787
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 5 cut(s) 123, 472, 477, 520, 823
Bst4CI ACNGT 3 cut(s) 346, 442, 818
Bst6I CTCTTC 3 cut(s) 71, 413, 418
BstAPI GCANNNNNTGC 1 cut(s) 775
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 110, 156, 1017
BstDEI CTNAG 2 cut(s) 621, 629
BstF5I GGATG 5 cut(s) 381, 513, 711, 715, 759
BstFNI CGCG 2 cut(s) 390, 428
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 5 cut(s) 126, 475, 480, 523, 826
BstMAI GTCTC 2 cut(s) 352, 428
BstMBI GATC 5 cut(s) 123, 472, 477, 520, 823
BstMWI GCNNNNNNNGC 5 cut(s) 312, 384, 697, 775, 784
BstNSI RCATGY 1 cut(s) 1019
BstSCI CCNGG 2 cut(s) 459, 609
BstUI CGCG 2 cut(s) 390, 428
BstV1I GCAGC 1 cut(s) 504
BstV2I GAAGAC 2 cut(s) 280, 316
BstX2I RGATCY 1 cut(s) 520
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 520
BsuRI GGCC 2 cut(s) 132, 614
BtgZI GCGATG 1 cut(s) 572
BtsCI GGATG 5 cut(s) 381, 513, 711, 715, 759
BtsI GCAGTG 2 cut(s) 707, 863
BtsIMutI CAGTG 4 cut(s) 28, 707, 863, 928
Cac8I GCNNGC 3 cut(s) 110, 156, 1017
CciI TCATGA 2 cut(s) 393, 480
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 607, 612
CseI GACGC 2 cut(s) 379, 406
Csp6I GTAC 1 cut(s) 923
CviAII CATG 5 cut(s) 394, 481, 697, 799, 1016
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 2 cut(s) 621, 629
DpnI GATC 5 cut(s) 125, 474, 479, 522, 825
DpnII GATC 5 cut(s) 123, 472, 477, 520, 823
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 3 cut(s) 71, 413, 418
EarI CTCTTC 3 cut(s) 71, 413, 418
EciI GGCGGA 3 cut(s) 241, 374, 805
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 221, 408
Eco32I GATATC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 406
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 980
EcoRV GATATC 1 cut(s) 901
EcoT38I GRGCYC 2 cut(s) 221, 408
Esp3I CGTCTC 2 cut(s) 352, 428
FaeI CATG 5 cut(s) 397, 484, 700, 802, 1019
FaqI GGGAC 1 cut(s) 695
FatI CATG 5 cut(s) 393, 480, 696, 798, 1015
FauI CCCGC 3 cut(s) 117, 308, 311
Fnu4HI GCNGC 5 cut(s) 255, 388, 429, 493, 788
FokI GGATG 5 cut(s) 368, 520, 718, 722, 766
FriOI GRGCYC 2 cut(s) 221, 408
Fsp4HI GCNGC 5 cut(s) 255, 388, 429, 493, 788
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 377
GluI GCNGC 5 cut(s) 255, 388, 429, 493, 788
HaeIII GGCC 2 cut(s) 132, 614
HapII CCGG 4 cut(s) 211, 460, 610, 717
HgaI GACGC 2 cut(s) 379, 406
HhaI GCGC 1 cut(s) 378
Hin1II CATG 5 cut(s) 397, 484, 700, 802, 1019
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HinfI GANTC 3 cut(s) 8, 625, 809
HpaII CCGG 4 cut(s) 211, 460, 610, 717
HphI GGTGA 5 cut(s) 152, 232, 262, 283, 980
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 6 cut(s) 123, 184, 446, 477, 814, 954
Hpy188III TCNNGA 2 cut(s) 394, 481
Hpy8I GTNNAC 1 cut(s) 607
Hpy99I CGWCG 1 cut(s) 899
HpyAV CCTTC 4 cut(s) 107, 258, 361, 641
HpyCH4III ACNGT 3 cut(s) 346, 442, 818
HpyCH4IV ACGT 3 cut(s) 223, 925, 958
HpyCH4V TGCA 6 cut(s) 665, 700, 769, 868, 1015, 1019
HpyF10VI GCNNNNNNNGC 5 cut(s) 312, 384, 697, 775, 784
HpyF3I CTNAG 2 cut(s) 621, 629
HpySE526I ACGT 3 cut(s) 223, 925, 958
Hsp92II CATG 5 cut(s) 397, 484, 700, 802, 1019
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 5 cut(s) 123, 472, 477, 520, 823
LguI GCTCTTC 2 cut(s) 71, 413
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 3 cut(s) 674, 735, 921
MaeI CTAG 1 cut(s) 779
MaeII ACGT 3 cut(s) 223, 925, 958
MaeIII GTNAC 3 cut(s) 712, 861, 926
MalI GATC 5 cut(s) 125, 474, 479, 522, 825
MbiI CCGCTC 1 cut(s) 787
MboI GATC 5 cut(s) 123, 472, 477, 520, 823
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 2 cut(s) 221, 408
MluCI AATT 2 cut(s) 942, 980
MlyI GAGTC 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 3 cut(s) 831, 941, 1027
MslI CAYNNNNRTG 1 cut(s) 917
MspI CCGG 4 cut(s) 211, 460, 610, 717
MspR9I CCNGG 2 cut(s) 461, 611
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 2 cut(s) 390, 428
MwoI GCNNNNNNNGC 5 cut(s) 312, 384, 697, 775, 784
NciI CCSGG 2 cut(s) 461, 611
NdeII GATC 5 cut(s) 123, 472, 477, 520, 823
NlaIII CATG 5 cut(s) 397, 484, 700, 802, 1019
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 861, 926
NspI RCATGY 1 cut(s) 1019
PaeI GCATGC 1 cut(s) 1019
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 2 cut(s) 393, 480
PciSI GCTCTTC 2 cut(s) 71, 413
PcsI WCGNNNNNNNCGW 1 cut(s) 554
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 8, 625
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 5 cut(s) 256, 389, 430, 494, 789
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
Ppu21I YACGTR 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 941
Psp124BI GAGCTC 1 cut(s) 408
PspPI GGNCC 2 cut(s) 607, 612
PspXI VCTCGAGB 1 cut(s) 401
PsuI RGATCY 1 cut(s) 520
PsyI GACNNNGTC 1 cut(s) 284
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
RseI CAYNNNNRTG 1 cut(s) 917
SacI GAGCTC 1 cut(s) 408
SapI GCTCTTC 2 cut(s) 71, 413
SaqAI TTAA 3 cut(s) 831, 941, 1027
SatI GCNGC 5 cut(s) 255, 388, 429, 493, 788
Sau3AI GATC 5 cut(s) 123, 472, 477, 520, 823
Sau96I GGNCC 2 cut(s) 607, 612
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 2 cut(s) 461, 611
SduI GDGCHC 2 cut(s) 221, 408
SfaNI GCATC 3 cut(s) 674, 735, 921
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 607
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 1 cut(s) 1019
Sse9I AATT 2 cut(s) 942, 980
SspMI CTAG 1 cut(s) 779
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 459, 609
TaaI ACNGT 3 cut(s) 346, 442, 818
TaiI ACGT 3 cut(s) 226, 928, 961
TaqI TCGA 3 cut(s) 402, 668, 807
TasI AATT 2 cut(s) 942, 980
TauI GCSGC 4 cut(s) 257, 390, 431, 790
TfiI GAWTC 2 cut(s) 8, 625
Tru1I TTAA 3 cut(s) 831, 941, 1027
Tru9I TTAA 3 cut(s) 831, 941, 1027
TscAI CASTG 4 cut(s) 28, 707, 870, 935
TseFI GTSAC 2 cut(s) 861, 926
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 2 cut(s) 861, 926
TspDTI ATGAA 5 cut(s) 25, 34, 58, 685, 927
TspRI CASTG 4 cut(s) 28, 707, 870, 935
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 607
VspI ATTAAT 1 cut(s) 941
XapI RAATTY 1 cut(s) 980
XceI RCATGY 1 cut(s) 1019
XhoI CTCGAG 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.