Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004046.1

Orthogroup ID

OG0005176

Physical Location & Seq

Genomic Coordinates Reverse (-)

95850 .. 96155

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004046.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgatgatgatgattgtgggaaagcggtattatggtgaagacattggacatgttgaagaggccaagaactttcgagaagctgttacggatgccatagaattgaactcgtcggcaaatttgggggactttttgccatttttacagtggggtgatgtatcagggttggagaagaagatggtgagcgtgatggtcaagatggacattttcttgcaggctatggtttcgaattgtcgcgaaactttgtctcgaattgtgatcaaaacaagggaggacgaggggtcaggaagttactggtcgatgatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00905 ko00943 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00905 map00943 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

101

Amino Acids

11.5

Weight (kDa)

4.91

Isoelectric Point (pI)

32.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005176)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33580 FvH4_2g33630 FvH4_2g33640
malus_domestica	MD08G1091500.v1.1 MD15G1075400.v1.1 MD15G1075500.v1.1
prunus_persica	Prupe.1G428700_v2.0.a1
pyrus_communis	pycom08g07380 pycom15g07050 pycom15g07060 pycom15g07070
rosa_chinensis	RchiOBHm_Chr6g0251291 RchiOBHm_Chr6g0308911 RchiOBHm_Chr6g0308921 RchiOBHm_Chr6g0308931
rosa_laevigata	RLG00000010602 RLG00000010604 RLG00000010605
rosa_multiflora	Rmu_co8379885.1_g000001 Rmu_co8470555.1_g000001 Rmu_sc0004046.1_g000020 Rmu_sc0004046.1_g000023 Rmu_ssc0000331.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159800
rosa_rugosa	Rorug06G0369200
rosa_samantha	Rh6AG480800 Rh6AG481000 Rh6DG481200 Rh6DG481300
rosa_wichuraiana	Rw6G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AciI	CCGC	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	115
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	56, 103
AhdI	GACNNNNNGTC	1 cut(s)	277
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	249
AoxI	GGCC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	47, 161, 190
AsuII	TTCGAA	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	45
BccI	CCATC	3 cut(s)	169, 181, 190
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	62
Bsp119I	TTCGAA	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	255
Bsp68I	TCGCGA	1 cut(s)	234
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	53
BstUI	CGCG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	149
BtuMI	TCGCGA	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	213
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	3 cut(s)	62, 80, 215
CviKI_1	RGCY	3 cut(s)	62, 80, 215
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
DriI	GACNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	51
Eam1105I	GACNNNNNGTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	51
FaeI	CATG	1 cut(s)	53
FaiI	YATR	4 cut(s)	33, 51, 95, 218
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	255
FokI	GGATG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	47, 161, 190
Hpy188III	TCNNGA	5 cut(s)	74, 193, 233, 246, 282
Hpy99I	CGWCG	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	255
LpnPI	CCDG	4 cut(s)	144, 197, 267, 277
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	82, 287
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	4 cut(s)	50, 68, 181, 184
MluCI	AATT	4 cut(s)	98, 115, 226, 249
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	3 cut(s)	52, 262, 268
MvnI	CGCG	1 cut(s)	234
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	234
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	224
PciI	ACATGT	1 cut(s)	49
PscI	ACATGT	1 cut(s)	49
RruI	TCGCGA	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	255
SetI	ASST	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	224
Sse9I	AATT	4 cut(s)	98, 115, 226, 249
SsiI	CCGC	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	4 cut(s)	73, 224, 247, 296
TasI	AATT	4 cut(s)	98, 115, 226, 249
TscAI	CASTG	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.