Rh6AG481000

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005176
Physical Location & Seq
Reverse (-)
66210280 .. 66211140
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG481000.1

Sequence Viewer

Length: 861 bp
ATGGGAGATCCCTTATCGAACAGTTTAGCTCTCTTCGTCTTTGCCCTGCTTCTCATCAAGCTTTTCATAACCAATAATAGATCACAAAAGTACAAGAATCTACCCCCAAGCCCTCCTTGCCTTCCTATTATCGGTCACCTCCATCTTCTCAGACAACCGATTCACCGGACCCTCGAATCACTCTCCGCAAAATACGGCAGAATCCAACTACTCCGATGGGGTTCACGGAGAGTAATCTTGGCCTTCTCACCATCGATAGTGGAAGAGTGTTTCACTAAGCACGACATTGTCTTCTCCAATCGCCCGCTCTTGCTCGCTGGAAAACACTTCCACTACAACTACACAACCGTTGTCGTAGCTCCCTACGGCGACTTATGGCGCAACCTCCGCTGTGTCATGACCCTCGAGATCTTCTCCTCGTCTCGTGTGGCCATGTTTTCAAGTATTAGACAAGGAGATGTCCGATTTTTACTCGATCAAATCTCGAAGAGTTGCAGTTTCGGTATGACAAAGGTTGAGCTCAAGTCCAAATGTATCCATCTTCCGTTCAATGTAATGACGATGATGATTCTGGGAAAGCGGTATTATGGCGAACACGTTGGACATGCTGAGGAGGCCAAGAACTTTCGAGAAGCTGTTACGGATGCCATAGAATTGAACTCATCGGCAAATTTGGGGGACTTTTTGCCATTTTTACAGTGGGGTGATGTATCAGGGTTGGAGAAGAAGATGGTGAGCGTGATGGCCAAGATGGACAGTTTCTTGCAGGCTATGGTTTCGGATTGTAGCGAAATTTTGTCTCTAATTGTGATCAAAACAAGGGAGGAGGAGGGGTCAGGAAGTTACTGGTCGATGATGTAG

Protein Analysis

286

Amino Acids

32.46

Weight (kDa)

9.1

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 267 9.4e-22 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 307
AciI CCGC 4 cut(s) 186, 305, 388, 580
AclWI GGATC 1 cut(s) 2
AcoI YGGCCR 2 cut(s) 429, 744
AcsI RAATTY 2 cut(s) 670, 792
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 595
AgsI TTSAA 3 cut(s) 441, 550, 658
AluBI AGCT 5 cut(s) 29, 61, 359, 520, 635
AluI AGCT 5 cut(s) 29, 61, 359, 520, 635
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 426, 804
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 4 cut(s) 240, 429, 615, 744
ApoI RAATTY 2 cut(s) 670, 792
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 168
AsuHPI GGTGA 5 cut(s) 128, 155, 240, 716, 745
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 168
BalI TGGCCA 2 cut(s) 431, 746
BanII GRGCYC 1 cut(s) 522
BauI CACGAG 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 609
BccI CCATC 7 cut(s) 150, 210, 259, 546, 724, 736, 745
BceAI ACGGC 2 cut(s) 211, 382
BciVI GTATCC 1 cut(s) 545
BclI TGATCA 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 426, 804
BfuI GTATCC 1 cut(s) 545
BglII AGATCT 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 170
BmsI GCATC 1 cut(s) 634
BpiI GAAGAC 1 cut(s) 283
BplI GAGNNNNNCTC 2 cut(s) 398, 430
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 506
Bsa29I ATCGAT 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 851
BseCI ATCGAT 1 cut(s) 254
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 163, 600
BseNI ACTGG 1 cut(s) 851
BseRI GAGGAG 4 cut(s) 406, 626, 839, 842
BshFI GGCC 4 cut(s) 242, 431, 617, 746
BshVI ATCGAT 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 426, 804
BsmBI CGTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 4 cut(s) 242, 431, 617, 746
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 5 cut(s) 7, 80, 408, 475, 810
BspACI CCGC 4 cut(s) 186, 305, 388, 580
BspANI GGCC 4 cut(s) 242, 431, 617, 746
BspCNI CTCAG 2 cut(s) 162, 601
BspDI ATCGAT 1 cut(s) 254
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 1 cut(s) 2
BsrBI CCGCTC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 851
BssMI GATC 5 cut(s) 7, 80, 408, 475, 810
BssSI CACGAG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 423
Bst4CI ACNGT 4 cut(s) 23, 349, 699, 758
Bst6I CTCTTC 3 cut(s) 38, 258, 482
BstC8I GCNNGC 3 cut(s) 305, 315, 768
BstDEI CTNAG 3 cut(s) 149, 276, 609
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 1 cut(s) 649
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 5 cut(s) 10, 83, 411, 478, 813
BstMAI GTCTC 2 cut(s) 426, 804
BstMBI GATC 5 cut(s) 7, 80, 408, 475, 810
BstMWI GCNNNNNNNGC 3 cut(s) 117, 387, 614
BstNSI RCATGY 1 cut(s) 608
BstPI GGTNACC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 2 cut(s) 7, 408
BstYI RGATCY 2 cut(s) 7, 408
Bsu15I ATCGAT 1 cut(s) 254
BsuI GTATCC 1 cut(s) 545
BsuRI GGCC 4 cut(s) 242, 431, 617, 746
BsuTUI ATCGAT 1 cut(s) 254
BtsCI GGATG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 305, 315, 768
CciI TCATGA 1 cut(s) 396
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 168
ClaI ATCGAT 1 cut(s) 254
Csp6I GTAC 1 cut(s) 91
CviAII CATG 3 cut(s) 397, 433, 605
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 149, 276, 609
DpnI GATC 5 cut(s) 9, 82, 410, 477, 812
DpnII GATC 5 cut(s) 7, 80, 408, 475, 810
EaeI YGGCCR 2 cut(s) 429, 744
Eam1104I CTCTTC 3 cut(s) 38, 258, 482
EarI CTCTTC 3 cut(s) 38, 258, 482
Ecl136II GAGCTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 520
Eco88I CYCGRG 1 cut(s) 404
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 520
EcoO65I GGTNACC 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 3 cut(s) 400, 436, 608
FaiI YATR 9 cut(s) 68, 376, 398, 434, 506, 588, 606, 650, 773
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 1 cut(s) 692
FatI CATG 3 cut(s) 396, 432, 604
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 810
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 522
GlaI GCGC 1 cut(s) 380
HaeIII GGCC 4 cut(s) 242, 431, 617, 746
HapII CCGG 1 cut(s) 166
HhaI GCGC 1 cut(s) 381
Hin1II CATG 3 cut(s) 400, 436, 608
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 5 cut(s) 97, 160, 176, 201, 568
HpaII CCGG 1 cut(s) 166
HphI GGTGA 5 cut(s) 128, 155, 240, 716, 745
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 4 cut(s) 152, 215, 464, 781
Hpy188III TCNNGA 5 cut(s) 397, 406, 484, 629, 837
Hpy8I GTNNAC 1 cut(s) 224
HpyAV CCTTC 2 cut(s) 131, 253
HpyCH4III ACNGT 4 cut(s) 23, 349, 699, 758
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 2 cut(s) 495, 766
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 387, 614
HpyF3I CTNAG 3 cut(s) 149, 276, 609
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 3 cut(s) 400, 436, 608
HspAI GCGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 5 cut(s) 7, 80, 408, 475, 810
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 8 cut(s) 59, 179, 303, 557, 699, 752, 822, 832
LweI GCATC 1 cut(s) 634
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 3 cut(s) 134, 637, 842
MalI GATC 5 cut(s) 9, 82, 410, 477, 812
MbiI CCGCTC 1 cut(s) 307
MboI GATC 5 cut(s) 7, 80, 408, 475, 810
MboII GAAGA 9 cut(s) 25, 137, 275, 283, 403, 499, 533, 736, 739
MflI RGATCY 2 cut(s) 7, 408
MhlI GDGCHC 1 cut(s) 522
MlsI TGGCCA 2 cut(s) 431, 746
MluCI AATT 4 cut(s) 653, 670, 792, 804
MluNI TGGCCA 2 cut(s) 431, 746
MmeI TCCRAC 3 cut(s) 229, 580, 699
Mox20I TGGCCA 2 cut(s) 431, 746
MscI TGGCCA 2 cut(s) 431, 746
Msp20I TGGCCA 2 cut(s) 431, 746
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 3 cut(s) 117, 387, 614
NdeII GATC 5 cut(s) 7, 80, 408, 475, 810
NlaIII CATG 3 cut(s) 400, 436, 608
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 404
PagI TCATGA 1 cut(s) 396
PfeI GAWTC 5 cut(s) 97, 160, 176, 201, 568
PflFI GACNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 522
PspEI GGTNACC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 168
PsuI RGATCY 2 cut(s) 7, 408
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 522
Sau3AI GATC 5 cut(s) 7, 80, 408, 475, 810
Sau96I GGNCC 1 cut(s) 168
SduI GDGCHC 1 cut(s) 522
SetI ASST 9 cut(s) 31, 63, 141, 361, 387, 516, 522, 600, 637
SfaNI GCATC 1 cut(s) 634
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 404, 521
SmoI CTYRAG 2 cut(s) 404, 521
Sse9I AATT 4 cut(s) 653, 670, 792, 804
SsiI CCGC 4 cut(s) 186, 305, 388, 580
SstI GAGCTC 1 cut(s) 522
TaaI ACNGT 4 cut(s) 23, 349, 699, 758
TaiI ACGT 1 cut(s) 600
TaqI TCGA 8 cut(s) 17, 174, 254, 405, 474, 485, 628, 851
TaqII GACCGA 1 cut(s) 122
TasI AATT 4 cut(s) 653, 670, 792, 804
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 5 cut(s) 97, 160, 176, 201, 568
TscAI CASTG 1 cut(s) 704
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 55
TspGWI ACGGA 3 cut(s) 241, 534, 656
TspRI CASTG 1 cut(s) 704
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 168
XapI RAATTY 2 cut(s) 670, 792
XceI RCATGY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XhoI CTCGAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.