Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005176

Physical Location & Seq

Genomic Coordinates Reverse (-)

64544710 .. 64550034

Gene Structure 5325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG481300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGGAGATCCCTTATCGAACAGTTTAGCTCTCATCGTCTTTGCCCTGCTTCTCATCAAGCTTTTCATAACCAATAATAGATCACAAAAGTACAAGAATCTACCCCCAAGCCCTCCTTGCCTTCCTATTATCGGTCACCTCCATCTTCTCAGACAACCGATCTACCGGACCCTCGAATCACTCTCCGCAAAATACGGCAGAATCCAACTACTCCGATGGGGTTCACGGAGAGTTGTCTTGGCCTTCTCGCCATCGATAGTGGAAGAGTGTTTCACTAAGCACGACATTGTCTTCTCCAATCACCCGCTCCTGCTCGCTGGAAAACACTTCCACTACAACTATACAACCGTTGTCGTAGTTCCCTACGGCGACTTATGGCGCAACCTCCGCTGTGTCATGACCCTCGAGATCTTCTCCTCGTCTCGCGTGGCCATGTTTTCAAGTATTAGACAAGGAGATGTCCAATTGTTACTCGATCAAATCTCGAAGAGTTGCAGTTCCGACGTTGGACATGCTGAGGAGGCCAAGAACTTTCGAGAAGCTGTTACGGATGCCATAGAATTGAACTCATCGGCAAATTTGGTGGACTTTTTGCCATTTTTACAGTGGGGTGATGTATCAGGGTTGGAGAAGAAGATGGTGAGCGTGATGGCCAAGATGGACAGTTTCTTGCAGGCTATGGTTTCGGATTGTCGCGAAACTTTGTCATCGAATTATGATCAAAACAATGGAGGAGGAGGGAGACCAAAACGCTTTATGACCCTTAAAATAGGGAAGGGTGGTGTGAAAATTTGGCTACTAATCTTGTACTACTATTGTAGGCATTGTTGGTGGTTGGGACTGATCGAGACTGATTCAACGACATTAGAATGGGCAATGTCACTATTGCTGAACCATCCAGATCAGTTGGATCAAGTCAGAGCTGAGATTGACTTCAAGGTCGGACAAGGGCGTCTGTTGGATGAGCAAGACTTGCCAAATCTGAATTACTTACAAAATGTGATCAATGAGACACTGCGCTTGTACCCTCTTGTTCCGCTTTTAGGGGTTTGTGAAGCCTCGGAGGATTGTGTAGTAGGCGGCTTTGATGTGCCTTGTGGTGCGATGATGGTGATAAACGCATGGGCTATTCATAGGGACCCTGAGTTGTGGAATGAGCCAACAAAATTTAAGCCGGAGAGATTTGAAGGATGGAGTGGCGAAGGTCCTCAAGGATATAAGCTAATTCCATTTGGCGGTGGAAGACGAGGTTGTTCGGGGGCTGGCCTATCCAACCGGTGTATTGGACTGGTACTAGGAAGCTTAATTCAGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00905 ko00943 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00905 map00943 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

439

Amino Acids

49.29

Weight (kDa)

7.11

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 182	9e-13	Cytochrome P450
p450	PF00067	172 - 439	3.1e-52	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005176)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33580 FvH4_2g33630 FvH4_2g33640
malus_domestica	MD08G1091500.v1.1 MD15G1075400.v1.1 MD15G1075500.v1.1
prunus_persica	Prupe.1G428700_v2.0.a1
pyrus_communis	pycom08g07380 pycom15g07050 pycom15g07060 pycom15g07070
rosa_chinensis	RchiOBHm_Chr6g0251291 RchiOBHm_Chr6g0308911 RchiOBHm_Chr6g0308921 RchiOBHm_Chr6g0308931
rosa_laevigata	RLG00000010602 RLG00000010604 RLG00000010605
rosa_multiflora	Rmu_co8379885.1_g000001 Rmu_co8470555.1_g000001 Rmu_sc0004046.1_g000020 Rmu_sc0004046.1_g000023 Rmu_ssc0000331.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159800
rosa_rugosa	Rorug06G0369200
rosa_samantha	Rh6AG480800 Rh6AG481000 Rh6DG481200 Rh6DG481300
rosa_wichuraiana	Rw6G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	938, 951
AccBSI	CCGCTC	1 cut(s)	307
AccII	CGCG	2 cut(s)	426, 696
AciI	CCGC	6 cut(s)	186, 305, 388, 1037, 1080, 1236
AclWI	GGATC	2 cut(s)	2, 918
AcoI	YGGCCR	2 cut(s)	429, 651
AcsI	RAATTY	3 cut(s)	577, 789, 1166
AcyI	GRCGYC	1 cut(s)	952
AfaI	GTAC	4 cut(s)	92, 809, 1025, 1293
AfiI	CCNNNNNNNGG	3 cut(s)	131, 1043, 1235
AgeI	ACCGGT	1 cut(s)	1275
AgsI	TTSAA	5 cut(s)	441, 565, 858, 937, 1187
AluBI	AGCT	6 cut(s)	29, 61, 542, 923, 1222, 1302
AluI	AGCT	6 cut(s)	29, 61, 542, 923, 1222, 1302
Alw26I	GTCTC	4 cut(s)	426, 736, 842, 1004
AlwI	GGATC	2 cut(s)	2, 918
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	5 cut(s)	240, 429, 522, 651, 1264
ApoI	RAATTY	3 cut(s)	577, 789, 1166
AsiGI	ACCGGT	1 cut(s)	1275
AspLEI	GCGC	2 cut(s)	381, 1020
AspS9I	GGNCC	3 cut(s)	168, 1138, 1205
AsuHPI	GGTGA	5 cut(s)	128, 293, 623, 652, 1123
AvaI	CYCGRG	1 cut(s)	404
AvaII	GGWCC	3 cut(s)	168, 1138, 1205
BalI	TGGCCA	2 cut(s)	431, 653
BbsI	GAAGAC	2 cut(s)	283, 1249
BbvCI	CCTCAGC	1 cut(s)	516
BccI	CCATC	9 cut(s)	150, 210, 259, 631, 643, 652, 903, 1102, 1185
BceAI	ACGGC	2 cut(s)	211, 382
BclI	TGATCA	2 cut(s)	718, 1002
BcoDI	GTCTC	4 cut(s)	426, 736, 842, 1004
BfaI	CTAG	1 cut(s)	1295
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	1 cut(s)	1081
BlsI	GCNGC	1 cut(s)	1082
Bme18I	GGWCC	3 cut(s)	168, 1138, 1205
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	3 cut(s)	168, 1138, 1205
BmiI	GGNNCC	3 cut(s)	170, 1139, 1140
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	283, 1249
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	1194
Bsa29I	ATCGAT	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	952
BsaI	GGTCTC	1 cut(s)	736
BsaJI	CCNNGG	1 cut(s)	1059
BsaWI	WCCGGW	2 cut(s)	165, 1275
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 1043, 1235
Bse118I	RCCGGY	1 cut(s)	1275
Bse1I	ACTGG	1 cut(s)	1293
Bse3DI	GCAATG	1 cut(s)	882
BseCI	ATCGAT	1 cut(s)	254
BseDI	CCNNGG	1 cut(s)	1059
BseGI	GGATG	4 cut(s)	556, 895, 967, 1196
BseLI	CCNNNNNNNGG	3 cut(s)	131, 1043, 1235
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	4 cut(s)	163, 507, 915, 1134
BseNI	ACTGG	1 cut(s)	1293
BseRI	GAGGAG	4 cut(s)	406, 533, 747, 750
Bsh1236I	CGCG	2 cut(s)	426, 696
BshFI	GGCC	5 cut(s)	242, 431, 524, 653, 1266
BshTI	ACCGGT	1 cut(s)	1275
BshVI	ATCGAT	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	166, 1175, 1276
BslFI	GGGAC	2 cut(s)	852, 1151
BslI	CCNNNNNNNGG	3 cut(s)	131, 1043, 1235
BsmAI	GTCTC	4 cut(s)	426, 736, 842, 1004
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	2 cut(s)	852, 1151
BsnI	GGCC	5 cut(s)	242, 431, 524, 653, 1266
Bso31I	GGTCTC	1 cut(s)	736
BsoBI	CYCGRG	1 cut(s)	404
Bsp68I	TCGCGA	1 cut(s)	696
BspACI	CCGC	6 cut(s)	186, 305, 388, 1037, 1080, 1236
BspANI	GGCC	5 cut(s)	242, 431, 524, 653, 1266
BspCNI	CTCAG	4 cut(s)	162, 508, 916, 1135
BspDI	ATCGAT	1 cut(s)	254
BspFNI	CGCG	2 cut(s)	426, 696
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	170, 1139, 1140
BspPI	GGATC	2 cut(s)	2, 918
BspTNI	GGTCTC	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	1 cut(s)	1275
BsrI	ACTGG	1 cut(s)	1293
BssAI	RCCGGY	1 cut(s)	1275
BssECI	CCNNGG	1 cut(s)	1059
BssNI	GRCGYC	1 cut(s)	952
Bst4CI	ACNGT	4 cut(s)	23, 349, 606, 665
Bst6I	CTCTTC	2 cut(s)	258, 482
BstACI	GRCGYC	1 cut(s)	952
BstAPI	GCANNNNNTGC	1 cut(s)	973
BstC8I	GCNNGC	3 cut(s)	315, 675, 1264
BstDEI	CTNAG	5 cut(s)	149, 276, 516, 924, 1143
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	4 cut(s)	556, 895, 967, 1196
BstFNI	CGCG	2 cut(s)	426, 696
BstHHI	GCGC	2 cut(s)	381, 1020
BstMAI	GTCTC	4 cut(s)	426, 736, 842, 1004
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 387, 521, 973
BstNSI	RCATGY	1 cut(s)	515
BstPI	GGTNACC	1 cut(s)	134
BstUI	CGCG	2 cut(s)	426, 696
BstV2I	GAAGAC	2 cut(s)	283, 1249
BstX2I	RGATCY	2 cut(s)	7, 408
BstYI	RGATCY	2 cut(s)	7, 408
Bsu15I	ATCGAT	1 cut(s)	254
BsuRI	GGCC	5 cut(s)	242, 431, 524, 653, 1266
BsuTUI	ATCGAT	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	1118
BtsCI	GGATG	4 cut(s)	556, 895, 967, 1196
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	2 cut(s)	611, 1013
BtuMI	TCGCGA	1 cut(s)	696
Cac8I	GCNNGC	3 cut(s)	315, 675, 1264
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	2 cut(s)	381, 1020
Cfr10I	RCCGGY	1 cut(s)	1275
Cfr13I	GGNCC	3 cut(s)	168, 1138, 1205
ClaI	ATCGAT	1 cut(s)	254
CseI	GACGC	1 cut(s)	941
Csp6I	GTAC	4 cut(s)	91, 808, 1024, 1292
CspAI	ACCGGT	1 cut(s)	1275
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	4 cut(s)	397, 433, 512, 1122
CviQI	GTAC	4 cut(s)	91, 808, 1024, 1292
DdeI	CTNAG	5 cut(s)	149, 276, 516, 924, 1143
DrdI	GACNNNNNNGTC	2 cut(s)	938, 951
DseDI	GACNNNNNNGTC	2 cut(s)	938, 951
EaeI	YGGCCR	2 cut(s)	429, 651
Eam1104I	CTCTTC	2 cut(s)	258, 482
EarI	CTCTTC	2 cut(s)	258, 482
Eco31I	GGTCTC	1 cut(s)	736
Eco47I	GGWCC	3 cut(s)	168, 1138, 1205
Eco88I	CYCGRG	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	134
EcoO109I	RGGNCCY	2 cut(s)	1138, 1205
EcoO65I	GGTNACC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	426
FaeI	CATG	4 cut(s)	400, 436, 515, 1125
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FaqI	GGGAC	2 cut(s)	852, 1151
FatI	CATG	4 cut(s)	396, 432, 511, 1121
FauI	CCCGC	1 cut(s)	312
FbaI	TGATCA	2 cut(s)	718, 1002
Fnu4HI	GCNGC	1 cut(s)	1081
FokI	GGATG	4 cut(s)	563, 882, 974, 1203
Fsp4HI	GCNGC	1 cut(s)	1081
FspBI	CTAG	1 cut(s)	1295
GlaI	GCGC	2 cut(s)	380, 1019
GluI	GCNGC	1 cut(s)	1081
HaeIII	GGCC	5 cut(s)	242, 431, 524, 653, 1266
HapII	CCGG	3 cut(s)	166, 1175, 1276
HgaI	GACGC	1 cut(s)	941
HhaI	GCGC	2 cut(s)	381, 1020
Hin1I	GRCGYC	1 cut(s)	952
Hin1II	CATG	4 cut(s)	400, 436, 515, 1125
Hin6I	GCGC	2 cut(s)	379, 1018
HinP1I	GCGC	2 cut(s)	379, 1018
HindIII	AAGCTT	2 cut(s)	59, 1300
HinfI	GANTC	4 cut(s)	97, 176, 201, 854
HpaII	CCGG	3 cut(s)	166, 1175, 1276
HphI	GGTGA	5 cut(s)	128, 293, 623, 652, 1123
Hpy166II	GTNNAC	2 cut(s)	224, 586
Hpy188I	TCNGA	8 cut(s)	152, 215, 502, 688, 920, 944, 984, 1063
Hpy188III	TCNNGA	7 cut(s)	397, 406, 484, 536, 695, 847, 899
Hpy8I	GTNNAC	2 cut(s)	224, 586
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	5 cut(s)	131, 253, 769, 1181, 1196
HpyCH4III	ACNGT	4 cut(s)	23, 349, 606, 665
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	2 cut(s)	495, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 387, 521, 973
HpyF3I	CTNAG	5 cut(s)	149, 276, 516, 924, 1143
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	952
Hsp92II	CATG	4 cut(s)	400, 436, 515, 1125
HspAI	GCGC	2 cut(s)	379, 1018
KflI	GGGWCCC	1 cut(s)	1138
Ksp22I	TGATCA	2 cut(s)	718, 1002
LmnI	GCTCC	1 cut(s)	312
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	1 cut(s)	1295
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	4 cut(s)	134, 468, 544, 879
MbiI	CCGCTC	1 cut(s)	307
MboII	GAAGA	8 cut(s)	137, 275, 283, 403, 499, 643, 646, 1254
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	2 cut(s)	7, 408
MlsI	TGGCCA	2 cut(s)	431, 653
MluCI	AATT	9 cut(s)	464, 560, 577, 712, 789, 985, 1166, 1224, 1305
MluNI	TGGCCA	2 cut(s)	431, 653
MmeI	TCCRAC	8 cut(s)	229, 487, 525, 606, 888, 922, 939, 1296
Mox20I	TGGCCA	2 cut(s)	431, 653
MscI	TGGCCA	2 cut(s)	431, 653
MseI	TTAA	3 cut(s)	765, 1170, 1304
MslI	CAYNNNNRTG	1 cut(s)	868
Msp20I	TGGCCA	2 cut(s)	431, 653
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	3 cut(s)	166, 1175, 1276
MunI	CAATTG	1 cut(s)	464
MvnI	CGCG	2 cut(s)	426, 696
MwoI	GCNNNNNNNGC	4 cut(s)	117, 387, 521, 973
NlaIII	CATG	4 cut(s)	400, 436, 515, 1125
NlaIV	GGNNCC	3 cut(s)	170, 1139, 1140
NmuCI	GTSAC	2 cut(s)	134, 879
NruI	TCGCGA	1 cut(s)	696
NspI	RCATGY	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	396
PfeI	GAWTC	4 cut(s)	97, 176, 201, 854
PflFI	GACNNNGTC	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	1275
PkrI	GCNGC	1 cut(s)	1082
PpuMI	RGGWCCY	2 cut(s)	1138, 1205
Psp5II	RGGWCCY	2 cut(s)	1138, 1205
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	170, 1139, 1140
PspPI	GGNCC	3 cut(s)	168, 1138, 1205
PspPPI	RGGWCCY	2 cut(s)	1138, 1205
PsuI	RGATCY	2 cut(s)	7, 408
PsyI	GACNNNGTC	1 cut(s)	287
RruI	TCGCGA	1 cut(s)	696
RsaI	GTAC	4 cut(s)	92, 809, 1025, 1293
RsaNI	GTAC	4 cut(s)	91, 808, 1024, 1292
RseI	CAYNNNNRTG	1 cut(s)	868
SaqAI	TTAA	3 cut(s)	765, 1170, 1304
SatI	GCNGC	1 cut(s)	1081
Sau96I	GGNCC	3 cut(s)	168, 1138, 1205
SfaNI	GCATC	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	3 cut(s)	168, 1138, 1205
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	868
SmlI	CTYRAG	2 cut(s)	404, 1209
SmoI	CTYRAG	2 cut(s)	404, 1209
Sse9I	AATT	9 cut(s)	464, 560, 577, 712, 789, 985, 1166, 1224, 1305
SsiI	CCGC	6 cut(s)	186, 305, 388, 1037, 1080, 1236
SspMI	CTAG	1 cut(s)	1295
TaaI	ACNGT	4 cut(s)	23, 349, 606, 665
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	9 cut(s)	17, 174, 254, 405, 474, 485, 535, 710, 846
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	9 cut(s)	464, 560, 577, 712, 789, 985, 1166, 1224, 1305
TatI	WGTACW	2 cut(s)	90, 807
TauI	GCSGC	1 cut(s)	1083
TfiI	GAWTC	4 cut(s)	97, 176, 201, 854
Tru1I	TTAA	3 cut(s)	765, 1170, 1304
Tru9I	TTAA	3 cut(s)	765, 1170, 1304
TscAI	CASTG	2 cut(s)	611, 1020
TseFI	GTSAC	2 cut(s)	134, 879
Tsp45I	GTSAC	2 cut(s)	134, 879
TspDTI	ATGAA	2 cut(s)	55, 1121
TspGWI	ACGGA	2 cut(s)	241, 563
TspRI	CASTG	2 cut(s)	611, 1020
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	168, 1138, 1205
XapI	RAATTY	3 cut(s)	577, 789, 1166
XceI	RCATGY	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	603
XhoI	CTCGAG	1 cut(s)	404
XspI	CTAG	1 cut(s)	1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.