Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379885.1

Orthogroup ID

OG0005176

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 446

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atgggagattcactatggttcagtgctttagctttcatcatcttcatcactctcatatacaagctcttcatatccaatagacaaaaataccacaaccttcccccaagcccgccctcacttccaatcatcggccacctccatctcctaaaacagccagctcaccgaaccctccaagctctctcggaaaactctggcaaagtcctcctcctccggtggggctcacgtaaagtcctcctcctcacctccccttccgccgcagaagaatgcttcaccaaaaacgacatcgtcttcaccaatcgcccccgcttgttgggcgggaaagtcttccactacgactacaccaccgtctccttcgcaccctacggcgacctctggcgcaacatccgccgcgtcatgacgctcgagctcttctcttcctctcgcctcgcggcgtttcaaaccgtca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

148

Amino Acids

16.91

Weight (kDa)

10.14

Isoelectric Point (pI)

63.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005176)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33580 FvH4_2g33630 FvH4_2g33640
malus_domestica	MD08G1091500.v1.1 MD15G1075400.v1.1 MD15G1075500.v1.1
prunus_persica	Prupe.1G428700_v2.0.a1
pyrus_communis	pycom08g07380 pycom15g07050 pycom15g07060 pycom15g07070
rosa_chinensis	RchiOBHm_Chr6g0251291 RchiOBHm_Chr6g0308911 RchiOBHm_Chr6g0308921 RchiOBHm_Chr6g0308931
rosa_laevigata	RLG00000010602 RLG00000010604 RLG00000010605
rosa_multiflora	Rmu_co8379885.1_g000001 Rmu_co8470555.1_g000001 Rmu_sc0004046.1_g000020 Rmu_sc0004046.1_g000023 Rmu_ssc0000331.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159800
rosa_rugosa	Rorug06G0369200
rosa_samantha	Rh6AG480800 Rh6AG481000 Rh6DG481200 Rh6DG481300
rosa_wichuraiana	Rw6G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	390, 428
AciI	CCGC	8 cut(s)	110, 252, 255, 304, 315, 385, 388, 428
AcoI	YGGCCR	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	128, 214, 310
AgsI	TTSAA	1 cut(s)	437
AluBI	AGCT	5 cut(s)	32, 64, 158, 176, 406
AluI	AGCT	5 cut(s)	32, 64, 158, 176, 406
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	378
AsuHPI	GGTGA	4 cut(s)	152, 232, 262, 283
AvaI	CYCGRG	1 cut(s)	401
BanII	GRGCYC	2 cut(s)	221, 408
BbsI	GAAGAC	2 cut(s)	280, 316
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	1 cut(s)	147
BceAI	ACGGC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	352
BisI	GCNGC	3 cut(s)	255, 388, 429
BlsI	GCNGC	3 cut(s)	256, 389, 430
BmeT110I	CYCGRG	1 cut(s)	401
BpiI	GAAGAC	2 cut(s)	280, 316
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BsaAI	YACGTR	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 214, 310
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	128, 214, 310
BseRI	GAGGAG	4 cut(s)	194, 197, 224, 227
Bsh1236I	CGCG	2 cut(s)	390, 428
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	3 cut(s)	128, 214, 310
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	221, 408
BspACI	CCGC	8 cut(s)	110, 252, 255, 304, 315, 385, 388, 428
BspANI	GGCC	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	390, 428
BspHI	TCATGA	1 cut(s)	393
BspQI	GCTCTTC	2 cut(s)	71, 413
Bst4CI	ACNGT	2 cut(s)	346, 442
Bst6I	CTCTTC	3 cut(s)	71, 413, 418
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	110, 156
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	2 cut(s)	390, 428
BstHHI	GCGC	1 cut(s)	378
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 384
BstUI	CGCG	2 cut(s)	390, 428
BstV2I	GAAGAC	2 cut(s)	280, 316
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	110, 156
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	378
CseI	GACGC	2 cut(s)	379, 406
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	9 cut(s)	32, 64, 108, 132, 154, 158, 176, 219, 406
CviKI_1	RGCY	9 cut(s)	32, 64, 108, 132, 154, 158, 176, 219, 406
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	3 cut(s)	71, 413, 418
EarI	CTCTTC	3 cut(s)	71, 413, 418
EciI	GGCGGA	2 cut(s)	241, 374
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	221, 408
Eco53kI	GAGCTC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	221, 408
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	1 cut(s)	397
FaiI	YATR	5 cut(s)	16, 56, 58, 71, 395
FatI	CATG	1 cut(s)	393
FauI	CCCGC	3 cut(s)	117, 308, 311
Fnu4HI	GCNGC	3 cut(s)	255, 388, 429
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	2 cut(s)	221, 408
Fsp4HI	GCNGC	3 cut(s)	255, 388, 429
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	255, 388, 429
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	211
HgaI	GACGC	2 cut(s)	379, 406
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	4 cut(s)	152, 232, 262, 283
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	107, 258, 361
HpyCH4III	ACNGT	2 cut(s)	346, 442
HpyCH4IV	ACGT	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 384
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	376
LguI	GCTCTTC	2 cut(s)	71, 413
LpnPI	CCDG	4 cut(s)	168, 177, 224, 358
MaeII	ACGT	1 cut(s)	223
MboII	GAAGA	7 cut(s)	34, 58, 272, 280, 316, 400, 405
MhlI	GDGCHC	2 cut(s)	221, 408
MroXI	GAANNNNTTC	1 cut(s)	323
MspI	CCGG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	269
MvnI	CGCG	2 cut(s)	390, 428
MwoI	GCNNNNNNNGC	2 cut(s)	312, 384
NlaIII	CATG	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	401
PagI	TCATGA	1 cut(s)	393
PciSI	GCTCTTC	2 cut(s)	71, 413
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	256, 389, 430
Ppu21I	YACGTR	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	408
PspXI	VCTCGAGB	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	408
SapI	GCTCTTC	2 cut(s)	71, 413
SatI	GCNGC	3 cut(s)	255, 388, 429
SduI	GDGCHC	2 cut(s)	221, 408
Sfr274I	CTCGAG	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SsiI	CCGC	8 cut(s)	110, 252, 255, 304, 315, 385, 388, 428
SstI	GAGCTC	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	346, 442
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	402
TauI	GCSGC	3 cut(s)	257, 390, 431
TfiI	GAWTC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	25, 34, 58
TspRI	CASTG	1 cut(s)	28
Tth111I	GACNNNGTC	1 cut(s)	284
XhoI	CTCGAG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.