Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005176

Physical Location & Seq

Genomic Coordinates Forward (+)

2895911 .. 2903629

Gene Structure 7719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGAGATCCCTTATTGTACAGTTTAGCTCTCATCGTCTTTGCCCTGCTTCTCATCAAGCTTTTCATAGCCAATAATAGATCACAAAAGTACAAGAATCTACCCCCAAGCCCTCCTTGTCTTCCTATTATCGGTCACCTTGATCTTCTCAGACAACCGATCCACCGGACCCTCGAATCACTCTCCGCAAAATACGGCAGAATCCAACTACTCCAATGGAGAGTTGTCTTGGTCTCCTCGCCATCTATAGTGGAAGAGTGTTTCACGAAGCACAACATTGCCTTCTCTAATCGCCCGCTCTTGCATGCTGGAAAACACTTCCACTACAACTACACAACCGTTGTCGTAGCTCCCTACGACGACTTATGGCGTAACCTCAGCCGTGTCATGACCCTCGAGATCTTCTCCTCGTCTCGCATGGCCATGTTTTCAAGTATCAGACTAGGAGAAGTCCAATTGCTACTCGATCAAATCTCGAAGAGTTGCAATTCCAGTATGACAAAGGTTGAGCTCAAGTCCAACTGTATCCATCTTCCGTTCAATGTACGTAATGACGATGATGATTGCGGGAAAGCGTGGGGTGATGTAGCAGGGTTGGAGAAGAAGATGGTGAGCGTGATGGCCAAGATGGACAGTTTCTTGCAGGCTATGGTTTCGGATCGTGGCGAAACTTTGATATCGAATTGTGATCAAAACAAGGGAGGAGGAGAGGCATTGTTGGTGGTTGGGATTGAGACTGGTTCAACGACATTAGAATGGGCAATGTCACTATTGCTGAACCATTCAAATCAGTTGGATCAAGTCAGAGCTGAGATTGACTTCAAGGTCAGACAAGGGCATCTGTTGGATGAGCAAGAATTGCCAAATCTGAATTACTTACAAAATGTGATCAATAAGACACTGCGCTTGTACCCTCATGTTCCGCTTTTAGGGGTTCGTGAAGCATCGGAGGATTGTGTAGTAGGCGGCTTTGATGTGCCTTGTGGTGCGATGATGGTGATCAACGCACAGGGCCAGCCCTGTGAGTTTGGAGGCTCAAGACGAAAAAAAAATCGAGGCCCCAAAACAGAGCGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00905 ko00943 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00905 map00943 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

360

Amino Acids

40.24

Weight (kDa)

8.32

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	35 - 181	3.8e-11	Cytochrome P450
p450	PF00067	238 - 337	5.9e-22	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005176)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33580 FvH4_2g33630 FvH4_2g33640
malus_domestica	MD08G1091500.v1.1 MD15G1075400.v1.1 MD15G1075500.v1.1
prunus_persica	Prupe.1G428700_v2.0.a1
pyrus_communis	pycom08g07380 pycom15g07050 pycom15g07060 pycom15g07070
rosa_chinensis	RchiOBHm_Chr6g0251291 RchiOBHm_Chr6g0308911 RchiOBHm_Chr6g0308921 RchiOBHm_Chr6g0308931
rosa_laevigata	RLG00000010602 RLG00000010604 RLG00000010605
rosa_multiflora	Rmu_co8379885.1_g000001 Rmu_co8470555.1_g000001 Rmu_sc0004046.1_g000020 Rmu_sc0004046.1_g000023 Rmu_ssc0000331.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159800
rosa_rugosa	Rorug06G0369200
rosa_samantha	Rh6AG480800 Rh6AG481000 Rh6DG481200 Rh6DG481300
rosa_wichuraiana	Rw6G041910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	824
AccBSI	CCGCTC	1 cut(s)	298
AciI	CCGC	5 cut(s)	186, 296, 567, 923, 966
AclWI	GGATC	4 cut(s)	2, 154, 666, 804
AcoI	YGGCCR	2 cut(s)	420, 621
AfaI	GTAC	4 cut(s)	20, 92, 546, 911
AfiI	CCNNNNNNNGG	2 cut(s)	131, 929
AgsI	TTSAA	5 cut(s)	432, 541, 744, 786, 823
AluBI	AGCT	5 cut(s)	29, 61, 350, 511, 809
AluI	AGCT	5 cut(s)	29, 61, 350, 511, 809
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	3 cut(s)	238, 417, 728
AlwI	GGATC	4 cut(s)	2, 154, 666, 804
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	420, 621, 1012, 1057
AspLEI	GCGC	1 cut(s)	906
AspS9I	GGNCC	3 cut(s)	168, 1012, 1058
AsuHPI	GGTGA	4 cut(s)	128, 593, 622, 1009
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	168
BalI	TGGCCA	2 cut(s)	422, 623
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	513
BbvCI	CCTCAGC	1 cut(s)	377
BccI	CCATC	6 cut(s)	250, 537, 601, 613, 622, 988
BceAI	ACGGC	2 cut(s)	211, 366
BciVI	GTATCC	1 cut(s)	536
BclI	TGATCA	3 cut(s)	688, 888, 999
BcoDI	GTCTC	3 cut(s)	238, 417, 728
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	1 cut(s)	967
BlsI	GCNGC	1 cut(s)	968
Bme18I	GGWCC	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	3 cut(s)	168, 1012, 1058
BmiI	GGNNCC	2 cut(s)	170, 1060
BmsI	GCATC	2 cut(s)	847, 953
BpiI	GAAGAC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
Bpu10I	CCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	497, 1021
BsaAI	YACGTR	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 929
Bse1I	ACTGG	2 cut(s)	492, 742
Bse3DI	GCAATG	2 cut(s)	276, 768
Bse8I	GATNNNNATC	1 cut(s)	998
BseGI	GGATG	1 cut(s)	853
BseJI	GATNNNNATC	1 cut(s)	998
BseLI	CCNNNNNNNGG	2 cut(s)	131, 929
BseMI	GCAATG	2 cut(s)	276, 768
BseMII	CTCAG	3 cut(s)	163, 391, 801
BseNI	ACTGG	2 cut(s)	492, 742
BseRI	GAGGAG	4 cut(s)	226, 397, 717, 720
BshFI	GGCC	4 cut(s)	422, 623, 1014, 1059
BsiHKAI	GWGCWC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	131, 929
BsmAI	GTCTC	3 cut(s)	238, 417, 728
BsmBI	CGTCTC	1 cut(s)	417
BsnI	GGCC	4 cut(s)	422, 623, 1014, 1059
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp1407I	TGTACA	1 cut(s)	18
BspACI	CCGC	5 cut(s)	186, 296, 567, 923, 966
BspANI	GGCC	4 cut(s)	422, 623, 1014, 1059
BspCNI	CTCAG	3 cut(s)	162, 390, 802
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	170, 1060
BspPI	GGATC	4 cut(s)	2, 154, 666, 804
BspTNI	GGTCTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	276, 768
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	492, 742
Bst4CI	ACNGT	4 cut(s)	23, 340, 524, 635
Bst6I	CTCTTC	2 cut(s)	249, 473
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstAUI	TGTACA	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	4 cut(s)	296, 306, 645, 1016
BstDEI	CTNAG	3 cut(s)	149, 377, 810
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	906
BstMAI	GTCTC	3 cut(s)	238, 417, 728
BstMWI	GCNNNNNNNGC	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	246
BstSNI	TACGTA	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	2 cut(s)	7, 399
BstYI	RGATCY	2 cut(s)	7, 399
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	422, 623, 1014, 1059
BtgZI	GCGATG	1 cut(s)	1004
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	1 cut(s)	899
BtsIMutI	CAGTG	1 cut(s)	899
Cac8I	GCNNGC	4 cut(s)	296, 306, 645, 1016
CciI	TCATGA	1 cut(s)	387
CfoI	GCGC	1 cut(s)	906
Cfr13I	GGNCC	3 cut(s)	168, 1012, 1058
CseI	GACGC	1 cut(s)	1061
Csp6I	GTAC	4 cut(s)	19, 91, 545, 910
CviAII	CATG	5 cut(s)	305, 388, 418, 424, 917
CviQI	GTAC	4 cut(s)	19, 91, 545, 910
DdeI	CTNAG	3 cut(s)	149, 377, 810
DrdI	GACNNNNNNGTC	1 cut(s)	824
DseDI	GACNNNNNNGTC	1 cut(s)	824
EaeI	YGGCCR	2 cut(s)	420, 621
Eam1104I	CTCTTC	2 cut(s)	249, 473
EarI	CTCTTC	2 cut(s)	249, 473
Ecl136II	GAGCTC	1 cut(s)	511
Eco105I	TACGTA	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	1058
EcoO65I	GGTNACC	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	5 cut(s)	308, 391, 421, 427, 920
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	5 cut(s)	304, 387, 417, 423, 916
FauI	CCCGC	2 cut(s)	303, 560
FbaI	TGATCA	3 cut(s)	688, 888, 999
Fnu4HI	GCNGC	1 cut(s)	967
FokI	GGATG	1 cut(s)	860
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	967
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	905
GluI	GCNGC	1 cut(s)	967
HaeIII	GGCC	4 cut(s)	422, 623, 1014, 1059
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	1061
HhaI	GCGC	1 cut(s)	906
Hin1II	CATG	5 cut(s)	308, 391, 421, 427, 920
Hin6I	GCGC	1 cut(s)	904
HinP1I	GCGC	1 cut(s)	904
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	3 cut(s)	97, 176, 201
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	4 cut(s)	128, 593, 622, 1009
Hpy188I	TCNGA	7 cut(s)	152, 440, 658, 806, 830, 870, 949
Hpy188III	TCNNGA	6 cut(s)	265, 388, 397, 475, 938, 1038
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	4 cut(s)	23, 340, 524, 635
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	3 cut(s)	304, 486, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	859
HpyF3I	CTNAG	3 cut(s)	149, 377, 810
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	5 cut(s)	308, 391, 421, 427, 920
HspAI	GCGC	1 cut(s)	904
Ksp22I	TGATCA	3 cut(s)	688, 888, 999
LmnI	GCTCC	1 cut(s)	355
LweI	GCATC	2 cut(s)	847, 953
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	134, 371, 765
MbiI	CCGCTC	1 cut(s)	298
MboII	GAAGA	8 cut(s)	113, 137, 266, 394, 490, 524, 613, 616
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	2 cut(s)	7, 399
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	2 cut(s)	422, 623
MluCI	AATT	5 cut(s)	455, 487, 682, 857, 871
MluNI	TGGCCA	2 cut(s)	422, 623
MmeI	TCCRAC	5 cut(s)	229, 543, 576, 774, 825
Mox20I	TGGCCA	2 cut(s)	422, 623
MscI	TGGCCA	2 cut(s)	422, 623
MslI	CAYNNNNRTG	2 cut(s)	422, 754
Msp20I	TGGCCA	2 cut(s)	422, 623
MspI	CCGG	1 cut(s)	166
MunI	CAATTG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	859
NlaIII	CATG	5 cut(s)	308, 391, 421, 427, 920
NlaIV	GGNNCC	2 cut(s)	170, 1060
NmuCI	GTSAC	2 cut(s)	134, 765
NspI	RCATGY	1 cut(s)	308
PaeI	GCATGC	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	395
PagI	TCATGA	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	97, 176, 201
PkrI	GCNGC	1 cut(s)	968
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	170, 1060
PspPI	GGNCC	3 cut(s)	168, 1012, 1058
PsuI	RGATCY	2 cut(s)	7, 399
RsaI	GTAC	4 cut(s)	20, 92, 546, 911
RsaNI	GTAC	4 cut(s)	19, 91, 545, 910
RseI	CAYNNNNRTG	2 cut(s)	422, 754
SacI	GAGCTC	1 cut(s)	513
SatI	GCNGC	1 cut(s)	967
Sau96I	GGNCC	3 cut(s)	168, 1012, 1058
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	2 cut(s)	847, 953
SfcI	CTRYAG	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	168
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	2 cut(s)	422, 754
SmlI	CTYRAG	3 cut(s)	395, 512, 1036
SmoI	CTYRAG	3 cut(s)	395, 512, 1036
SnaBI	TACGTA	1 cut(s)	548
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	5 cut(s)	455, 487, 682, 857, 871
SsiI	CCGC	5 cut(s)	186, 296, 567, 923, 966
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	513
TaaI	ACNGT	4 cut(s)	23, 340, 524, 635
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	6 cut(s)	174, 396, 465, 476, 680, 1054
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	455, 487, 682, 857, 871
TatI	WGTACW	2 cut(s)	18, 90
TauI	GCSGC	1 cut(s)	969
TfiI	GAWTC	3 cut(s)	97, 176, 201
TscAI	CASTG	1 cut(s)	906
TseFI	GTSAC	2 cut(s)	134, 765
Tsp45I	GTSAC	2 cut(s)	134, 765
TspDTI	ATGAA	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	395
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.