RchiOBHm_Chr7g0198531

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005942
Physical Location & Seq
Reverse (-)
16429218 .. 16431031
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17762

Sequence Viewer

Length: 816 bp
ATGTTACAACCAATTTGTGTTGTCACCGGGGCCAACAAAGGGATTGGATTTGAGATATGCAGGCAACTAGCTTCTAATGGGATCCTGGTAGTATTAACTGCAAGAGATGTGAAGAGCGGACAAGAAGCTGTCGAAAAGCTCAAGCTTTCTGGCTTGACTGATGTAATTTTTCATCAACTAGATGTAACCGATGCAACTAGCATTGCTTCTTTAGCAGATTTCATCGAATCCCAGTTCGGGAAGCTTGACATATTGATGTTTGGTTCAAAAGCTGGAGACTTGAAAAAGCATCTAGAGCAAACATACGAAAGGGCAGAGAAATGTCTGAAAACGAACTACTATGGAATCAAGCAAATGAGCAAAGCAACTATTCGACTTCTGCAAAAATCTGGTTCACCTAAAATGGTCAATGTCTCTTCCATCGGAGGACAGTTAAAGCGTGTTACGCATCAGAAAGCAAGGGATGAACTAGGAGATGTTCAAGGCCTCACCGAAGAGAAAGTGGACAAGGTTGTTGAGGAGTTTCTGAAGGATGCGAAAGAGAATTTGGTTGAAGCTAATGACTGGCCTATAAACTTCTCTGCTTACGTAGTGTCCAAGGCAGCCATGAATGCTTACACCAGAGTTCTGGCAAAGAGCCACCCCGAAATTGCAATCAATGCAGTTAGTCCTGGCTACACTAGCACTGACATGACCTTCAACGTTGGCGGGCACTCTGTTGAAGAAGGTGCAAAGGGTCCTGTTAAGCTGGCCTTGAGTCCTGAAGGTGGACCTTCTAGCCTCTATTTTGACCAGCTTGAAGTCTCATCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

271

Amino Acids

29.43

Weight (kDa)

6.24

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 6 - 146 2.9e-25 short chain dehydrogenase
KR PF08659 7 - 145 8.9e-08 KR domain
adh_short_C2 PF13561 10 - 144 8.8e-20 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 191 - 233 1e-06 short chain dehydrogenase
adh_short_C2 PF13561 192 - 237 1.8e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 2 cut(s) 117, 708
AclI AACGTT 1 cut(s) 702
AclWI GGATC 2 cut(s) 76, 89
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 2 cut(s) 548, 783
AfiI CCNNNNNNNGG 3 cut(s) 39, 237, 767
AgsI TTSAA 7 cut(s) 267, 283, 482, 554, 700, 722, 800
AjnI CCWGG 2 cut(s) 84, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 9 cut(s) 71, 128, 139, 145, 244, 272, 557, 748, 796
AluI AGCT 9 cut(s) 71, 128, 139, 145, 244, 272, 557, 748, 796
Alw26I GTCTC 3 cut(s) 270, 418, 808
AlwI GGATC 2 cut(s) 76, 89
AoxI GGCC 4 cut(s) 30, 484, 566, 750
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 30, 737, 770
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 16, 387, 481
AvaII GGWCC 2 cut(s) 737, 770
BaeGI GKGCMC 1 cut(s) 714
BamHI GGATCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 614
BccI CCATC 1 cut(s) 428
BciT130I CCWGG 2 cut(s) 86, 672
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 3 cut(s) 270, 418, 808
BfaI CTAG 7 cut(s) 68, 179, 198, 293, 470, 681, 777
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 28, 86, 672
Bme18I GGWCC 2 cut(s) 737, 770
BmgT120I GGNCC 3 cut(s) 30, 737, 770
BmiI GGNNCC 3 cut(s) 31, 83, 738
BmrFI CCNGG 3 cut(s) 28, 86, 672
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 4 cut(s) 181, 298, 457, 523
BmuI ACTGGG 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 125, 775
BpuMI CCSGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 589
BsaJI CCNNGG 2 cut(s) 27, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 237, 767
Bse1I ACTGG 2 cut(s) 232, 569
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 86, 672
BseDI CCNNGG 2 cut(s) 27, 597
BseGI GGATG 2 cut(s) 469, 538
BseLI CCNNNNNNNGG 3 cut(s) 39, 237, 767
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 232, 569
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 714
BseXI GCAGC 1 cut(s) 614
BshFI GGCC 4 cut(s) 32, 486, 568, 752
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 39, 237, 767
BsmAI GTCTC 3 cut(s) 270, 418, 808
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 4 cut(s) 32, 486, 568, 752
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 2 cut(s) 117, 708
BspANI GGCC 4 cut(s) 32, 486, 568, 752
BspLI GGNNCC 3 cut(s) 31, 83, 738
BspPI GGATC 2 cut(s) 76, 89
BspQI GCTCTTC 1 cut(s) 107
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 2 cut(s) 232, 569
BssECI CCNNGG 2 cut(s) 27, 597
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 86, 672
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 3 cut(s) 107, 421, 489
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 589
BstC8I GCNNGC 3 cut(s) 62, 710, 750
BstF5I GGATG 2 cut(s) 469, 538
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 3 cut(s) 270, 418, 808
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 6 cut(s) 212, 295, 445, 611, 659, 681
BstNI CCWGG 2 cut(s) 86, 672
BstSCI CCNGG 3 cut(s) 26, 84, 670
BstSLI GKGCMC 1 cut(s) 714
BstSNI TACGTA 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 4 cut(s) 32, 486, 568, 752
BtsCI GGATG 2 cut(s) 469, 538
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 62, 710, 750
Cfr13I GGNCC 3 cut(s) 30, 737, 770
CviAII CATG 2 cut(s) 607, 691
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 3 cut(s) 107, 421, 489
EarI CTCTTC 3 cut(s) 107, 421, 489
Eco105I TACGTA 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 486
Eco47I GGWCC 2 cut(s) 737, 770
Eco57I CTGAAG 2 cut(s) 548, 783
EcoO109I RGGNCCY 1 cut(s) 737
EcoRII CCWGG 2 cut(s) 84, 670
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 2 cut(s) 610, 694
FaiI YATR 7 cut(s) 58, 251, 304, 342, 572, 608, 692
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FatI CATG 2 cut(s) 606, 690
FauI CCCGC 1 cut(s) 701
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 2 cut(s) 476, 545
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 7 cut(s) 68, 179, 198, 293, 470, 681, 777
GluI GCNGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 4 cut(s) 32, 486, 568, 752
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 610, 694
HindIII AAGCTT 2 cut(s) 143, 242
HinfI GANTC 3 cut(s) 227, 345, 757
HpaII CCGG 1 cut(s) 27
HphI GGTGA 3 cut(s) 16, 387, 481
Hpy166II GTNNAC 3 cut(s) 395, 505, 770
Hpy188I TCNGA 4 cut(s) 327, 425, 453, 528
Hpy188III TCNNGA 3 cut(s) 238, 293, 761
Hpy8I GTNNAC 3 cut(s) 395, 505, 770
HpyAV CCTTC 5 cut(s) 523, 706, 719, 758, 783
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 2 cut(s) 588, 702
HpyCH4V TGCA 7 cut(s) 60, 101, 194, 382, 653, 662, 731
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 295, 445, 611, 659, 681
HpySE526I ACGT 2 cut(s) 588, 702
Hsp92II CATG 2 cut(s) 610, 694
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 107
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 4 cut(s) 181, 298, 457, 523
MaeI CTAG 7 cut(s) 68, 179, 198, 293, 470, 681, 777
MaeII ACGT 2 cut(s) 588, 702
MaeIII GTNAC 4 cut(s) 3, 22, 184, 442
MalI GATC 1 cut(s) 83
MbiI CCGCTC 1 cut(s) 117
MboI GATC 1 cut(s) 81
MboII GAAGA 4 cut(s) 124, 408, 506, 734
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 4 cut(s) 12, 165, 544, 648
MlyI GAGTC 1 cut(s) 766
MnlI CCTC 4 cut(s) 419, 497, 511, 791
MseI TTAA 3 cut(s) 95, 434, 744
MslI CAYNNNNRTG 2 cut(s) 254, 689
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 3 cut(s) 28, 86, 672
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 2 cut(s) 86, 672
MwoI GCNNNNNNNGC 6 cut(s) 212, 295, 445, 611, 659, 681
NciI CCSGG 1 cut(s) 28
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 610, 694
NlaIV GGNNCC 3 cut(s) 31, 83, 738
NmuCI GTSAC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 107
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 227, 345
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
Ppu21I YACGTR 1 cut(s) 589
PpuMI RGGWCCY 1 cut(s) 737
Psp1406I AACGTT 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 737
Psp6I CCWGG 2 cut(s) 84, 670
PspGI CCWGG 2 cut(s) 84, 670
PspN4I GGNNCC 3 cut(s) 31, 83, 738
PspPI GGNCC 3 cut(s) 30, 737, 770
PspPPI RGGWCCY 1 cut(s) 737
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 2 cut(s) 254, 689
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 95, 434, 744
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 3 cut(s) 30, 737, 770
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 3 cut(s) 28, 86, 672
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 4 cut(s) 181, 298, 457, 523
SinI GGWCC 2 cut(s) 737, 770
SmiMI CAYNNNNRTG 2 cut(s) 254, 689
SmlI CTYRAG 2 cut(s) 140, 754
SmoI CTYRAG 2 cut(s) 140, 754
SnaBI TACGTA 1 cut(s) 589
Sse9I AATT 4 cut(s) 12, 165, 544, 648
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 2 cut(s) 117, 708
SspMI CTAG 7 cut(s) 68, 179, 198, 293, 470, 681, 777
StuI AGGCCT 1 cut(s) 486
StyD4I CCNGG 3 cut(s) 26, 84, 670
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 2 cut(s) 591, 705
TaqI TCGA 3 cut(s) 132, 225, 373
TasI AATT 4 cut(s) 12, 165, 544, 648
TfiI GAWTC 2 cut(s) 227, 345
Tru1I TTAA 3 cut(s) 95, 434, 744
Tru9I TTAA 3 cut(s) 95, 434, 744
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 161, 211, 480, 623
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 2 cut(s) 737, 770
XapI RAATTY 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 292
XspI CTAG 7 cut(s) 68, 179, 198, 293, 470, 681, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.