Rh7DG173900

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005942
Physical Location & Seq
Reverse (-)
15908706 .. 15919544
10839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG173900.1

Sequence Viewer

Length: 987 bp
ATGGGCTTCATCGAGGAGGTCGACAATAATGCGGATGGAGGGATTCTGGTCTGGTTGCTTTTCCAAGTCATTGCTTTGTCCTCTAGAAGAATTTGTGTGGTCACCGGGGCCAACAAAGGGATTGGATTTGAGATATGCAGGCAACTAGCTTCTAATGGGATCCTGGTAGTATTAACTGCAAGAGATGTGAAGAGCGGACAAGAAGCTGTCGAAAAGCTCAAGCTTTCTGGCTTGACTGATGTAATTTTTCATCAACTAGATGTAACCGATGCAACTAGCATTGCTTCTTTAGCAGATTTCATCGAATCCCAGTTCGGGAAGCTTGACATATTGGTCAACAATGCAGGAGTTAACGGAATCACAGTGATCGGAGGGAATGCAAAGAACATAACTTTTGATTATGAGCATATGTTTGGTTCAAAAGCTGGAGACTTGAAAAAGCATCTAGAGCAAACATACGAAAGTGCAGAGAAATGTCTGAAAACGAACTACTATGGAATCAAGCAAATGAGCAAAGCAACTATTCGACTTCTGCAAAAATCTGGTTCACCTAAAATGGTCAATGTCTCTTCCAACGGAGGACAGTTAAAGCGTGTTACGCATCAGAAAGCAAGGGATGAGCTAGGAGATGTTCAAGGCCTCACCGAAGAGAAAGTGGACAAGGTTGTTGAGGAGTTTCTAAAAGATGCCAAAGAGAATTTGGTTGAAGCTAATGGCTGGCCTATAAACTTCTCTGCTTACATAGTGTCCAAGGCAGCCATGAATGCTTACACCAGAGTTCTGGCAAAGAGCCACCCCGAAATTGCAATCAATGCAGTTAGTCCTGGCTACACTAGCACTGACATGACCTTCAACGTTGGCGGGCACTCTGTTGAAGAAGGTGCAAAGGGTCCTGTTAAGCTGGCCTTGAGCCCTGAAGGCTTGTACCAGGATCAGTGGTTTTCATATTCATCTGCAGGAGCCAAGAGATTAGAAGCTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

328

Amino Acids

35.51

Weight (kDa)

6.12

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 31 - 197 3.1e-26 short chain dehydrogenase
KR PF08659 33 - 119 1.2e-06 KR domain
adh_short_C2 PF13561 36 - 195 1.2e-17 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 242 - 284 2.8e-06 short chain dehydrogenase
adh_short_C2 PF13561 243 - 288 2.7e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccBSI CCGCTC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 21
AciI CCGC 3 cut(s) 32, 195, 861
AclI AACGTT 1 cut(s) 855
AclWI GGATC 3 cut(s) 154, 167, 939
AcsI RAATTY 2 cut(s) 90, 697
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 1 cut(s) 926
AfiI CCNNNNNNNGG 2 cut(s) 117, 315
AgsI TTSAA 6 cut(s) 420, 436, 635, 707, 853, 875
AjnI CCWGG 3 cut(s) 162, 823, 927
Alw26I GTCTC 2 cut(s) 423, 571
AlwI GGATC 3 cut(s) 154, 167, 939
AoxI GGCC 4 cut(s) 108, 637, 719, 903
ApeKI GCWGC 1 cut(s) 755
ApoI RAATTY 2 cut(s) 90, 697
AspS9I GGNCC 2 cut(s) 108, 890
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 3 cut(s) 94, 540, 634
AvaII GGWCC 1 cut(s) 890
BaeGI GKGCMC 1 cut(s) 867
BamHI GGATCC 1 cut(s) 159
BanII GRGCYC 1 cut(s) 914
BbvI GCAGC 1 cut(s) 767
BccI CCATC 1 cut(s) 29
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 3 cut(s) 164, 825, 929
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 423, 571
BfaI CTAG 7 cut(s) 84, 146, 257, 276, 446, 623, 834
BfmI CTRYAG 1 cut(s) 954
BglI GCCNNNNNGGC 1 cut(s) 918
BisI GCNGC 1 cut(s) 756
BlsI GCNGC 1 cut(s) 757
Bme1390I CCNGG 4 cut(s) 106, 164, 825, 929
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 2 cut(s) 108, 890
BmiI GGNNCC 4 cut(s) 109, 161, 891, 961
BmrFI CCNGG 4 cut(s) 106, 164, 825, 929
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 4 cut(s) 259, 451, 610, 676
BmuI ACTGGG 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 447
BpuEI CTTGAG 2 cut(s) 203, 928
BpuMI CCSGG 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 105, 750
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 315
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 2 cut(s) 69, 279
BseBI CCWGG 3 cut(s) 164, 825, 929
BseDI CCNNGG 2 cut(s) 105, 750
BseGI GGATG 2 cut(s) 40, 622
BseLI CCNNNNNNNGG 2 cut(s) 117, 315
BseMI GCAATG 2 cut(s) 69, 279
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 2 cut(s) 29, 686
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 1 cut(s) 767
BseYI CCCAGC 1 cut(s) 977
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 4 cut(s) 110, 639, 721, 905
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 117, 315
BsmAI GTCTC 2 cut(s) 423, 571
BsmI GAATGC 2 cut(s) 382, 769
BsnI GGCC 4 cut(s) 110, 639, 721, 905
Bsp1286I GDGCHC 2 cut(s) 867, 914
Bsp143I GATC 3 cut(s) 159, 366, 931
BspACI CCGC 3 cut(s) 32, 195, 861
BspANI GGCC 4 cut(s) 110, 639, 721, 905
BspLI GGNNCC 4 cut(s) 109, 161, 891, 961
BspMAI CTGCAG 1 cut(s) 958
BspPI GGATC 3 cut(s) 154, 167, 939
BspQI GCTCTTC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 69, 279
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 105, 750
BssMI GATC 3 cut(s) 159, 366, 931
BssT1I CCWWGG 1 cut(s) 750
Bst2UI CCWGG 3 cut(s) 164, 825, 929
Bst4CI ACNGT 2 cut(s) 364, 585
Bst6I CTCTTC 3 cut(s) 185, 574, 642
BstAPI GCANNNNNTGC 1 cut(s) 812
BstC8I GCNNGC 4 cut(s) 140, 719, 863, 903
BstEII GGTNACC 1 cut(s) 100
BstF5I GGATG 2 cut(s) 40, 622
BstKTI GATC 3 cut(s) 162, 369, 934
BstMAI GTCTC 2 cut(s) 423, 571
BstMBI GATC 3 cut(s) 159, 366, 931
BstMWI GCNNNNNNNGC 7 cut(s) 290, 448, 598, 764, 812, 834, 918
BstNI CCWGG 3 cut(s) 164, 825, 929
BstPI GGTNACC 1 cut(s) 100
BstSCI CCNGG 4 cut(s) 104, 162, 823, 927
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 1 cut(s) 867
BstV1I GCAGC 1 cut(s) 767
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 4 cut(s) 110, 639, 721, 905
BtsCI GGATG 2 cut(s) 40, 622
BtsIMutI CAGTG 3 cut(s) 369, 837, 941
Cac8I GCNNGC 4 cut(s) 140, 719, 863, 903
Cfr13I GGNCC 2 cut(s) 108, 890
Csp6I GTAC 1 cut(s) 925
CviAII CATG 2 cut(s) 760, 844
CviQI GTAC 1 cut(s) 925
DpnI GATC 3 cut(s) 161, 368, 933
DpnII GATC 3 cut(s) 159, 366, 931
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
Eam1104I CTCTTC 3 cut(s) 185, 574, 642
EarI CTCTTC 3 cut(s) 185, 574, 642
Eco130I CCWWGG 1 cut(s) 750
Eco147I AGGCCT 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 914
Eco47I GGWCC 1 cut(s) 890
Eco57I CTGAAG 1 cut(s) 936
Eco91I GGTNACC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 890
EcoO65I GGTNACC 1 cut(s) 100
EcoRII CCWGG 3 cut(s) 162, 823, 927
EcoT14I CCWWGG 1 cut(s) 750
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 750
FaeI CATG 2 cut(s) 763, 847
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FatI CATG 2 cut(s) 759, 843
FauI CCCGC 1 cut(s) 854
FauNDI CATATG 1 cut(s) 408
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 756
FokI GGATG 2 cut(s) 47, 629
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 1 cut(s) 756
FspBI CTAG 7 cut(s) 84, 146, 257, 276, 446, 623, 834
GluI GCNGC 1 cut(s) 756
GsaI CCCAGC 1 cut(s) 981
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 4 cut(s) 110, 639, 721, 905
HapII CCGG 1 cut(s) 105
Hin1II CATG 2 cut(s) 763, 847
HincII GTYRAC 3 cut(s) 22, 337, 352
HindII GTYRAC 3 cut(s) 22, 337, 352
HindIII AAGCTT 2 cut(s) 221, 320
HinfI GANTC 4 cut(s) 43, 305, 357, 498
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 1 cut(s) 105
HphI GGTGA 3 cut(s) 94, 540, 634
Hpy166II GTNNAC 5 cut(s) 22, 337, 352, 548, 658
Hpy188I TCNGA 3 cut(s) 371, 480, 606
Hpy188III TCNNGA 3 cut(s) 84, 316, 446
Hpy8I GTNNAC 5 cut(s) 22, 337, 352, 548, 658
HpyAV CCTTC 3 cut(s) 859, 872, 911
HpyCH4III ACNGT 2 cut(s) 364, 585
HpyCH4IV ACGT 1 cut(s) 855
HpyF10VI GCNNNNNNNGC 7 cut(s) 290, 448, 598, 764, 812, 834, 918
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 2 cut(s) 763, 847
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 3 cut(s) 159, 366, 931
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 959
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 4 cut(s) 259, 451, 610, 676
MaeI CTAG 7 cut(s) 84, 146, 257, 276, 446, 623, 834
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 100, 262, 595
MalI GATC 3 cut(s) 161, 368, 933
MbiI CCGCTC 1 cut(s) 195
MboI GATC 3 cut(s) 159, 366, 931
MboII GAAGA 5 cut(s) 99, 202, 561, 659, 887
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 867, 914
MluCI AATT 5 cut(s) 90, 243, 697, 801, 982
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 8 cut(s) 7, 10, 32, 91, 365, 572, 650, 664
MseI TTAA 4 cut(s) 173, 351, 587, 897
MslI CAYNNNNRTG 1 cut(s) 842
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 4 cut(s) 106, 164, 825, 929
Mva1269I GAATGC 2 cut(s) 382, 769
MvaI CCWGG 3 cut(s) 164, 825, 929
MwoI GCNNNNNNNGC 7 cut(s) 290, 448, 598, 764, 812, 834, 918
NciI CCSGG 1 cut(s) 106
NdeI CATATG 1 cut(s) 408
NdeII GATC 3 cut(s) 159, 366, 931
NlaIII CATG 2 cut(s) 763, 847
NlaIV GGNNCC 4 cut(s) 109, 161, 891, 961
NmuCI GTSAC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 2 cut(s) 382, 769
PfeI GAWTC 4 cut(s) 43, 305, 357, 498
PkrI GCNGC 1 cut(s) 757
PpuMI RGGWCCY 1 cut(s) 890
Psp1406I AACGTT 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 890
Psp6I CCWGG 3 cut(s) 162, 823, 927
PspEI GGTNACC 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 977
PspGI CCWGG 3 cut(s) 162, 823, 927
PspN4I GGNNCC 4 cut(s) 109, 161, 891, 961
PspPI GGNCC 2 cut(s) 108, 890
PspPPI RGGWCCY 1 cut(s) 890
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 1 cut(s) 926
RsaNI GTAC 1 cut(s) 925
RseI CAYNNNNRTG 1 cut(s) 842
SalI GTCGAC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 4 cut(s) 173, 351, 587, 897
SatI GCNGC 1 cut(s) 756
Sau3AI GATC 3 cut(s) 159, 366, 931
Sau96I GGNCC 2 cut(s) 108, 890
ScrFI CCNGG 4 cut(s) 106, 164, 825, 929
SduI GDGCHC 2 cut(s) 867, 914
SfaNI GCATC 4 cut(s) 259, 451, 610, 676
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 1 cut(s) 890
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 2 cut(s) 218, 907
SmoI CTYRAG 2 cut(s) 218, 907
Sse9I AATT 5 cut(s) 90, 243, 697, 801, 982
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 3 cut(s) 32, 195, 861
SspMI CTAG 7 cut(s) 84, 146, 257, 276, 446, 623, 834
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 4 cut(s) 104, 162, 823, 927
StyI CCWWGG 1 cut(s) 750
TaaI ACNGT 2 cut(s) 364, 585
TaiI ACGT 1 cut(s) 858
TaqI TCGA 5 cut(s) 12, 21, 210, 303, 526
TasI AATT 5 cut(s) 90, 243, 697, 801, 982
TfiI GAWTC 4 cut(s) 43, 305, 357, 498
Tru1I TTAA 4 cut(s) 173, 351, 587, 897
Tru9I TTAA 4 cut(s) 173, 351, 587, 897
TscAI CASTG 3 cut(s) 369, 844, 941
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 5 cut(s) 239, 289, 776, 933, 939
TspGWI ACGGA 2 cut(s) 369, 591
TspRI CASTG 3 cut(s) 369, 844, 941
VpaK11BI GGWCC 1 cut(s) 890
XapI RAATTY 2 cut(s) 90, 697
XbaI TCTAGA 2 cut(s) 83, 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 7 cut(s) 84, 146, 257, 276, 446, 623, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.