Rorug07G0058400

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005942
Physical Location & Seq
Reverse (-)
4205673 .. 4206149
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0058400.1

Sequence Viewer

Length: 477 bp
ATGTGTGTGTCGCAAGAGTGGTCTGCTCTCATAAAAAGCTCTCGTTTCATTGCAATTCACCAAAAATGCCTTCAACGCTTGAATCCTCCGAATCTCTGTTTACTCTATGGTCACAGTTCCGGAAGTAGATATGCTAAATATCCCAAGCACCATGGGATTTCATTGCTTGACAAAGACACACATTTGGAGGGATTAGATCTGCCTGAACGTGTCCAGCAAGACTCTTATGATAGGTTGATACTTATTGCGGGATCTAGCAATGGTCTAGTCTGCCTTCATCCTCTTAACACTCCGAAGGAGATAATCGTCGTGTGGAACCCAGCAACAAGACAGCATAGGTATCTTCCTAAACCATTGTCTTTTAAGGGTAGGAAGGAGACTTCTGATGCACCACTGTTAGGTTTCGGATTCATTAACGACAATGGCAAGTATAATATTGATTACAAAGTCGTGAGGATTTCCCAGCAAGGATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

158

Amino Acids

17.88

Weight (kDa)

9.34

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 119
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 2 cut(s) 74, 82
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 255, 266
BglII AGATCT 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 317
BmsI GCATC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 151
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse3DI GCAATG 3 cut(s) 48, 161, 265
BseAI TCCGGA 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 3 cut(s) 48, 161, 265
BseYI CCCAGC 2 cut(s) 319, 462
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 371
Bsp13I TCCGGA 1 cut(s) 119
Bsp143I GATC 3 cut(s) 196, 251, 470
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 1 cut(s) 248
BspEI TCCGGA 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 3 cut(s) 48, 161, 265
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 196, 251, 470
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 116, 396
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 199, 254, 473
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 196, 251, 470
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 196, 251
BstYI RGATCY 2 cut(s) 196, 251
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 392
CviAII CATG 1 cut(s) 152
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
DpnI GATC 3 cut(s) 198, 253, 472
DpnII GATC 3 cut(s) 196, 251, 470
Eco130I CCWWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 155
FaiI YATR 7 cut(s) 32, 108, 132, 153, 228, 336, 432
FatI CATG 1 cut(s) 151
FauI CCCGC 1 cut(s) 241
FokI GGATG 1 cut(s) 264
FspBI CTAG 2 cut(s) 255, 266
GsaI CCCAGC 2 cut(s) 323, 466
HapII CCGG 1 cut(s) 120
Hin1II CATG 1 cut(s) 155
HinfI GANTC 4 cut(s) 82, 91, 221, 408
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 90, 294, 385, 407
Hpy188III TCNNGA 3 cut(s) 120, 451, 474
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 80, 284, 289, 367
HpyCH4III ACNGT 2 cut(s) 116, 396
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 53, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 119
Kzo9I GATC 3 cut(s) 196, 251, 470
LpnPI CCDG 4 cut(s) 133, 216, 227, 333
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 255, 266
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 198, 253, 472
MboI GATC 3 cut(s) 196, 251, 470
MboII GAAGA 1 cut(s) 335
MflI RGATCY 2 cut(s) 196, 251
MluCI AATT 1 cut(s) 54
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 4 cut(s) 96, 181, 291, 447
MroI TCCGGA 1 cut(s) 119
MseI TTAA 3 cut(s) 285, 363, 414
MspI CCGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 75
NcoI CCATGG 1 cut(s) 151
NdeII GATC 3 cut(s) 196, 251, 470
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 3 cut(s) 82, 91, 408
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspFI CCCAGC 2 cut(s) 319, 462
PspN4I GGNNCC 1 cut(s) 317
PsuI RGATCY 2 cut(s) 196, 251
SaqAI TTAA 3 cut(s) 285, 363, 414
Sau3AI GATC 3 cut(s) 196, 251, 470
SchI GAGTC 1 cut(s) 215
SetI ASST 5 cut(s) 41, 211, 236, 341, 403
SfaNI GCATC 1 cut(s) 376
Sse9I AATT 1 cut(s) 54
SsiI CCGC 1 cut(s) 248
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 255, 266
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 116, 396
TaiI ACGT 1 cut(s) 211
TasI AATT 1 cut(s) 54
TfiI GAWTC 3 cut(s) 82, 91, 408
Tru1I TTAA 3 cut(s) 285, 363, 414
Tru9I TTAA 3 cut(s) 285, 363, 414
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 37, 150, 266, 400
TspRI CASTG 1 cut(s) 399
XspI CTAG 2 cut(s) 255, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.