Rh6AG149500

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005942
Physical Location & Seq
Reverse (-)
23520081 .. 23520687
607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG149500.1

Sequence Viewer

Length: 432 bp
ATGTCGTCTACATGGTTTTTAAAAATTCCAAACCCTATTCCGGCCTACTTTTCATTTCTTAAGCATCAGAAAGCAAAGGATGAGCTAGGAGATGTCGAAGGACTCACCGAAGAGAAAGTGGACAAGGTTATCGAGGAGTTTCTAAAGGATGCGAAAGAGAATTTGGTCGAAGCTAATGGCTGGCCTATAAACTTCTCTGCTTACATGGTGTCTAAGGTAGCCATGAATGCTTACACCAGAGTTTTGGCAAAGAATCACCTCGAAATTGCAATCAATGCAGTTACTCCTGGCTACACTAGCACTGACATGACCTTCAATGTTGGCAGGCAATCTGTTGAAGAAGGTGCAAAGGGTCCTGTTAAGCTGGCCTTGAGCCTTGAAGGTGGACCTTCTGGCCTCTATTTTGACCAGCTTGAAGTCTCACCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

143

Amino Acids

15.82

Weight (kDa)

5.04

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 63 - 107 6e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AcsI RAATTY 2 cut(s) 24, 160
AfiI CCNNNNNNNGG 1 cut(s) 40
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 316, 338, 380, 416
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 4 cut(s) 85, 173, 364, 412
AluI AGCT 4 cut(s) 85, 173, 364, 412
Alw26I GTCTC 1 cut(s) 424
AoxI GGCC 4 cut(s) 42, 182, 366, 394
ApoI RAATTY 2 cut(s) 24, 160
AspS9I GGNCC 2 cut(s) 353, 386
AsuHPI GGTGA 3 cut(s) 97, 248, 414
AvaII GGWCC 2 cut(s) 353, 386
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 2 cut(s) 86, 297
BfrI CTTAAG 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 288
Bme18I GGWCC 2 cut(s) 353, 386
BmgT120I GGNCC 2 cut(s) 353, 386
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 73, 139
BpuEI CTTGAG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 85, 154
BseLI CCNNNNNNNGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 149
BshFI GGCC 4 cut(s) 44, 184, 368, 396
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 4 cut(s) 44, 184, 368, 396
BspANI GGCC 4 cut(s) 44, 184, 368, 396
BspLI GGNNCC 1 cut(s) 354
BspTI CTTAAG 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 105
BstAFI CTTAAG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 182, 326, 366
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 85, 154
BstMAI GTCTC 1 cut(s) 424
BstMWI GCNNNNNNNGC 3 cut(s) 227, 275, 297
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 244
BsuRI GGCC 4 cut(s) 44, 184, 368, 396
BtsCI GGATG 2 cut(s) 85, 154
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 182, 326, 366
Cfr13I GGNCC 2 cut(s) 353, 386
CviAII CATG 4 cut(s) 12, 205, 223, 307
DdeI CTNAG 1 cut(s) 213
DraI TTTAAA 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 353, 386
EcoO109I RGGNCCY 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 4 cut(s) 15, 208, 226, 310
FaiI YATR 5 cut(s) 13, 188, 206, 224, 308
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 4 cut(s) 11, 204, 222, 306
FblI GTMKAC 1 cut(s) 8
FokI GGATG 2 cut(s) 92, 161
FspBI CTAG 2 cut(s) 86, 297
HaeIII GGCC 4 cut(s) 44, 184, 368, 396
HapII CCGG 1 cut(s) 41
Hin1II CATG 4 cut(s) 15, 208, 226, 310
HinfI GANTC 2 cut(s) 102, 253
HpaII CCGG 1 cut(s) 41
HphI GGTGA 3 cut(s) 97, 248, 414
Hpy166II GTNNAC 3 cut(s) 9, 121, 386
Hpy188I TCNGA 1 cut(s) 69
Hpy8I GTNNAC 3 cut(s) 9, 121, 386
HpyAV CCTTC 5 cut(s) 92, 322, 335, 374, 399
HpyCH4V TGCA 3 cut(s) 269, 278, 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 275, 297
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 4 cut(s) 15, 208, 226, 310
LweI GCATC 2 cut(s) 73, 139
MaeI CTAG 2 cut(s) 86, 297
MaeIII GTNAC 1 cut(s) 280
MboII GAAGA 2 cut(s) 122, 350
MluCI AATT 3 cut(s) 24, 160, 264
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 3 cut(s) 127, 269, 407
MseI TTAA 3 cut(s) 20, 60, 360
MslI CAYNNNNRTG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 227, 275, 297
NlaIII CATG 4 cut(s) 15, 208, 226, 310
NlaIV GGNNCC 1 cut(s) 354
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 253
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 353, 386
PspPPI RGGWCCY 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 3 cut(s) 20, 60, 360
Sau96I GGNCC 2 cut(s) 353, 386
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 288
SfaNI GCATC 2 cut(s) 73, 139
SinI GGWCC 2 cut(s) 353, 386
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 59, 370
SmoI CTYRAG 2 cut(s) 59, 370
Sse9I AATT 3 cut(s) 24, 160, 264
SspMI CTAG 2 cut(s) 86, 297
StyD4I CCNGG 1 cut(s) 286
TaqI TCGA 4 cut(s) 96, 132, 168, 261
TasI AATT 3 cut(s) 24, 160, 264
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 3 cut(s) 20, 60, 360
Tru9I TTAA 3 cut(s) 20, 60, 360
TscAI CASTG 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 42, 239
TspRI CASTG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 353, 386
XapI RAATTY 2 cut(s) 24, 160
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 2 cut(s) 86, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.