Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005942

Physical Location & Seq

Genomic Coordinates Reverse (-)

19016418 .. 19017556

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCTTCTTAAGCATCAGAAAGCAAAAGATGAGCTAGGAGATGTCGAAGGACTCACCGAAGAGAAAGTGGACAAGGTTATCGAGGAGTTTCTAAAGGATGCGAAAGAGAATTTGGTCGAAGCTAATGGCTGGCCTATAAACTTCTCTGCTTACATGGTGTCTAAGGCAGCCATGAATGCTTACACCAGAGTTTTGGCAAAGAATCACCCCGAAATTGCAGTCAATGCAGTTACTACTGGCTACACTAGCACTGACATGACCTTCAATGTTGGCAAGCAATCTGTTGAAGAAGGTGCAAAGGGTCCTGTTAAGCTGGCCTTGAGCCCTGAAGGTGGACCTTCTGGCCTCTATTTTGACCAGCTTGAAGTCTCACCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

126

Amino Acids

13.74

Weight (kDa)

4.9

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	46 - 92	4.2e-07	short chain dehydrogenase
adh_short_C2	PF13561	47 - 92	3.4e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0198481 RchiOBHm_Chr7g0198501 RchiOBHm_Chr7g0198531 RchiOBHm_Chr7g0198561
rosa_laevigata	RLG00000003863 RLG00000003865
rosa_multiflora	Rmu_sc0002122.1_g000001 Rmu_sc0004229.1_g000021 Rmu_sc0004229.1_g000027 Rmu_sc0030219.1_g000001 Rmu_ssc0000486.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257650 Rroxscaffold_3G00257680
rosa_rugosa	Rorug07G0058300 Rorug07G0058400 Rorug07G0058500
rosa_samantha	Rh6AG149500 Rh6CG145500 Rh6DG134700 Rh7CG194200 Rh7CG194300 Rh7DG173900 Rh7DG174000 Rh7DG174100 Rh7DG249000
rosa_wichuraiana	Rw7G015030 Rw7G015040 Rw7G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	332
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	265, 287, 365
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	34, 122, 313, 361
AluI	AGCT	4 cut(s)	34, 122, 313, 361
Alw26I	GTCTC	1 cut(s)	373
AoxI	GGCC	3 cut(s)	131, 315, 343
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspS9I	GGNCC	2 cut(s)	302, 335
AsuHPI	GGTGA	3 cut(s)	46, 197, 363
AvaII	GGWCC	2 cut(s)	302, 335
BanII	GRGCYC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	2 cut(s)	35, 246
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme18I	GGWCC	2 cut(s)	302, 335
BmgT120I	GGNCC	2 cut(s)	302, 335
BmiI	GGNNCC	1 cut(s)	303
BmsI	GCATC	2 cut(s)	22, 88
BpuEI	CTTGAG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	3 cut(s)	133, 317, 345
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	133, 317, 345
Bsp1286I	GDGCHC	1 cut(s)	326
BspANI	GGCC	3 cut(s)	133, 317, 345
BspLI	GGNNCC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	8
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	131, 275, 315
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 176, 224, 246
BstV1I	GCAGC	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	133, 317, 345
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	131, 275, 315
Cfr13I	GGNCC	2 cut(s)	302, 335
CviAII	CATG	3 cut(s)	154, 172, 256
DdeI	CTNAG	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	302, 335
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	326
FaeI	CATG	3 cut(s)	157, 175, 259
FaiI	YATR	4 cut(s)	137, 155, 173, 257
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	3 cut(s)	153, 171, 255
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	35, 246
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	133, 317, 345
Hin1II	CATG	3 cut(s)	157, 175, 259
HinfI	GANTC	2 cut(s)	51, 202
HphI	GGTGA	3 cut(s)	46, 197, 363
Hpy166II	GTNNAC	2 cut(s)	70, 335
Hpy188I	TCNGA	1 cut(s)	18
Hpy8I	GTNNAC	2 cut(s)	70, 335
HpyAV	CCTTC	5 cut(s)	41, 271, 284, 323, 348
HpyCH4V	TGCA	3 cut(s)	218, 227, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 176, 224, 246
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	157, 175, 259
LpnPI	CCDG	8 cut(s)	115, 199, 222, 299, 318, 327, 339, 371
Lsp1109I	GCAGC	1 cut(s)	179
LweI	GCATC	2 cut(s)	22, 88
MaeI	CTAG	2 cut(s)	35, 246
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	71, 299
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	2 cut(s)	109, 213
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	76, 356
MseI	TTAA	2 cut(s)	9, 309
MslI	CAYNNNNRTG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	10, 176, 224, 246
NlaIII	CATG	3 cut(s)	157, 175, 259
NlaIV	GGNNCC	1 cut(s)	303
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	302, 335
PspPPI	RGGWCCY	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	9, 309
SatI	GCNGC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	302, 335
SchI	GAGTC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	9 cut(s)	36, 78, 124, 263, 295, 315, 334, 340, 363
SfaNI	GCATC	2 cut(s)	22, 88
SinI	GGWCC	2 cut(s)	302, 335
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	8, 319
SmoI	CTYRAG	2 cut(s)	8, 319
Sse9I	AATT	2 cut(s)	109, 213
SspMI	CTAG	2 cut(s)	35, 246
TaqI	TCGA	3 cut(s)	45, 81, 117
TasI	AATT	2 cut(s)	109, 213
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	9, 309
Tru9I	TTAA	2 cut(s)	9, 309
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	256
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	302, 335
XapI	RAATTY	1 cut(s)	109
XspI	CTAG	2 cut(s)	35, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.