Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005942

Physical Location & Seq

Genomic Coordinates Forward (+)

25767733 .. 25768607

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGCAAAGCACTTATTCGACTTCTGCAAAAGTCTGATTCACCGAAAATAGTCAATGTCTCTTCCAACGTAGGACAGTCGTTAAAGCTTCTTACGCATCCGAAAGCAAGGGATGAGTTAGGAGATGTCGAAGGCCTCACCGAAGAGAAAGTGGACAAGGTTGTCGAGGATTTTCTGAAGGATGTGAAAGAGAATTTGGTCGAAGCTAATGGCTGGCCTATAAACTTCTCTGCTTACAATGTGTCCAAGGCAGCCTTGAATGCTTACACTAAAGTTCTGGCAAAGAATCACCCCAATATTGCAATCAATGCAGTTGATCCCAGCCACACTAGCACTGACTTGAGCTTCAATCTTGGTGGCCACTCTGTTGAAGAAGGTGCAAAGGGTCCTGTTAAGCTGGCCTTGAGCCCTGAAGGTGGACCTTCTGGCCTCTATTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

147

Amino Acids

15.77

Weight (kDa)

5.8

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0198481 RchiOBHm_Chr7g0198501 RchiOBHm_Chr7g0198531 RchiOBHm_Chr7g0198561
rosa_laevigata	RLG00000003863 RLG00000003865
rosa_multiflora	Rmu_sc0002122.1_g000001 Rmu_sc0004229.1_g000021 Rmu_sc0004229.1_g000027 Rmu_sc0030219.1_g000001 Rmu_ssc0000486.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257650 Rroxscaffold_3G00257680
rosa_rugosa	Rorug07G0058300 Rorug07G0058400 Rorug07G0058500
rosa_samantha	Rh6AG149500 Rh6CG145500 Rh6DG134700 Rh7CG194200 Rh7CG194300 Rh7DG173900 Rh7DG174000 Rh7DG174100 Rh7DG249000
rosa_wichuraiana	Rw7G015030 Rw7G015040 Rw7G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	197, 432
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	259, 349, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	4 cut(s)	88, 206, 345, 397
AluI	AGCT	4 cut(s)	88, 206, 345, 397
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	5 cut(s)	133, 215, 358, 399, 427
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	386, 419
AsuHPI	GGTGA	3 cut(s)	33, 130, 281
AvaII	GGWCC	2 cut(s)	386, 419
BalI	TGGCCA	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	2 cut(s)	330, 442
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	386, 419
BmgT120I	GGNCC	2 cut(s)	386, 419
BmiI	GGNNCC	1 cut(s)	387
BmsI	GCATC	1 cut(s)	106
BpuEI	CTTGAG	2 cut(s)	361, 424
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	3 cut(s)	97, 118, 187
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	263
BseYI	CCCAGC	1 cut(s)	320
BshFI	GGCC	5 cut(s)	135, 217, 360, 401, 429
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	5 cut(s)	135, 217, 360, 401, 429
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	316
BspANI	GGCC	5 cut(s)	135, 217, 360, 401, 429
BspLI	GGNNCC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	2 cut(s)	67, 138
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	215, 399
BstF5I	GGATG	3 cut(s)	97, 118, 187
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 260, 308, 330
BstV1I	GCAGC	1 cut(s)	263
BsuRI	GGCC	5 cut(s)	135, 217, 360, 401, 429
BtsCI	GGATG	3 cut(s)	97, 118, 187
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	2 cut(s)	215, 399
Cfr13I	GGNCC	2 cut(s)	386, 419
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	67, 138
EarI	CTCTTC	2 cut(s)	67, 138
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	2 cut(s)	386, 419
Eco57I	CTGAAG	2 cut(s)	197, 432
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	246
FaiI	YATR	1 cut(s)	221
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 386, 418
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	3 cut(s)	84, 125, 194
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	330, 442
GluI	GCNGC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	5 cut(s)	135, 217, 360, 401, 429
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	38, 286
HphI	GGTGA	3 cut(s)	33, 130, 281
Hpy166II	GTNNAC	2 cut(s)	154, 419
Hpy188I	TCNGA	3 cut(s)	37, 102, 177
Hpy8I	GTNNAC	2 cut(s)	154, 419
HpyAV	CCTTC	5 cut(s)	125, 172, 368, 407, 432
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	4 cut(s)	28, 302, 311, 380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 260, 308, 330
HpySE526I	ACGT	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	199, 263, 334, 383, 402, 411, 423
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	330, 442
MaeII	ACGT	1 cut(s)	69
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	54, 155, 383
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	360
MluCI	AATT	1 cut(s)	193
MluNI	TGGCCA	1 cut(s)	360
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	146, 160, 440
Mox20I	TGGCCA	1 cut(s)	360
MscI	TGGCCA	1 cut(s)	360
MseI	TTAA	2 cut(s)	83, 393
Msp20I	TGGCCA	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	94, 260, 308, 330
NdeII	GATC	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	135
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	38, 286
PkrI	GCNGC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	386, 419
PspPPI	RGGWCCY	1 cut(s)	386
SaqAI	TTAA	2 cut(s)	83, 393
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	386, 419
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	9 cut(s)	72, 90, 162, 208, 347, 379, 399, 418, 424
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	2 cut(s)	386, 419
SmlI	CTYRAG	2 cut(s)	340, 403
SmoI	CTYRAG	2 cut(s)	340, 403
Sse9I	AATT	1 cut(s)	193
SseBI	AGGCCT	1 cut(s)	135
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	2 cut(s)	330, 442
StuI	AGGCCT	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	19, 129, 165, 201
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	2 cut(s)	38, 286
Tru1I	TTAA	2 cut(s)	83, 393
Tru9I	TTAA	2 cut(s)	83, 393
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	1 cut(s)	251
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	386, 419
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	2 cut(s)	330, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.