Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005942

Physical Location & Seq

Genomic Coordinates Forward (+)

17083212 .. 17084933

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAAACAAATGTGTGGGAGCTTCTTAAGCATCAGAAAGCAAGGGATGAGCTGGGAGATGTCGAAGGACTCACCGAAGAGAAAGTGGACAAGGTTATCGAGGAGTTTCTGAAGGATGCGAAAGAGAATTTGGTCGAAGCTAATGGCTGGCCTATAAACTTCTCTGCTTACATGGTGTCCAAGGCAGCCATGAATGCTTACACCAGAGTTCTGGCAAAGAATCACCCCAAAATTGCAATCAATGCAGTTACTCCTGGCTACACTAGCACTGACATGACCTTCAATGTTGGCAGGCAATCTGTTGAAGAAGATGCAAAGGGTCCTGTTAAGCTGGCCTTGAGCCCTGAAGGTGGACCTTCTGGCCTCTATTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

125

Amino Acids

13.82

Weight (kDa)

4.95

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	52 - 96	1e-07	short chain dehydrogenase
adh_short_C2	PF13561	53 - 100	6e-07	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0198481 RchiOBHm_Chr7g0198501 RchiOBHm_Chr7g0198531 RchiOBHm_Chr7g0198561
rosa_laevigata	RLG00000003863 RLG00000003865
rosa_multiflora	Rmu_sc0002122.1_g000001 Rmu_sc0004229.1_g000021 Rmu_sc0004229.1_g000027 Rmu_sc0030219.1_g000001 Rmu_ssc0000486.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257650 Rroxscaffold_3G00257680
rosa_rugosa	Rorug07G0058300 Rorug07G0058400 Rorug07G0058500
rosa_samantha	Rh6AG149500 Rh6CG145500 Rh6DG134700 Rh7CG194200 Rh7CG194300 Rh7DG173900 Rh7DG174000 Rh7DG174100 Rh7DG249000
rosa_wichuraiana	Rw7G015030 Rw7G015040 Rw7G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	131, 366
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	283, 305
AjnI	CCWGG	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	22, 52, 140, 331
AluI	AGCT	4 cut(s)	22, 52, 140, 331
AoxI	GGCC	3 cut(s)	149, 333, 361
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	320, 353
AsuHPI	GGTGA	2 cut(s)	64, 215
AvaII	GGWCC	2 cut(s)	320, 353
BanII	GRGCYC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	2 cut(s)	264, 376
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	320, 353
BmgT120I	GGNCC	2 cut(s)	320, 353
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	3 cut(s)	40, 106, 301
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	52, 121
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	3 cut(s)	151, 335, 363
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	151, 335, 363
Bsp1286I	GDGCHC	1 cut(s)	344
BspANI	GGCC	3 cut(s)	151, 335, 363
BspLI	GGNNCC	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	149, 293, 333
BstF5I	GGATG	2 cut(s)	52, 121
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 194, 242, 264
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	151, 335, 363
BtsCI	GGATG	2 cut(s)	52, 121
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	149, 293, 333
Cfr13I	GGNCC	2 cut(s)	320, 353
CviAII	CATG	3 cut(s)	172, 190, 274
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	320, 353
Eco57I	CTGAAG	2 cut(s)	131, 366
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	175, 193, 277
FaiI	YATR	4 cut(s)	155, 173, 191, 275
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	3 cut(s)	171, 189, 273
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	59, 128
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	264, 376
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	151, 335, 363
Hin1II	CATG	3 cut(s)	175, 193, 277
HinfI	GANTC	2 cut(s)	69, 220
HphI	GGTGA	2 cut(s)	64, 215
Hpy166II	GTNNAC	2 cut(s)	88, 353
Hpy188I	TCNGA	2 cut(s)	36, 111
Hpy8I	GTNNAC	2 cut(s)	88, 353
HpyAV	CCTTC	5 cut(s)	59, 106, 289, 341, 366
HpyCH4V	TGCA	3 cut(s)	236, 245, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 194, 242, 264
Hsp92II	CATG	3 cut(s)	175, 193, 277
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	3 cut(s)	40, 106, 301
MaeI	CTAG	2 cut(s)	264, 376
MaeIII	GTNAC	1 cut(s)	247
MboII	GAAGA	3 cut(s)	89, 317, 320
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	2 cut(s)	127, 231
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	94, 374
MseI	TTAA	2 cut(s)	27, 327
MslI	CAYNNNNRTG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	28, 194, 242, 264
NlaIII	CATG	3 cut(s)	175, 193, 277
NlaIV	GGNNCC	1 cut(s)	321
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PpuMI	RGGWCCY	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	2 cut(s)	320, 353
PspPPI	RGGWCCY	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	27, 327
SatI	GCNGC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	320, 353
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	344
SetI	ASST	8 cut(s)	24, 54, 96, 142, 281, 333, 352, 358
SfaNI	GCATC	3 cut(s)	40, 106, 301
SinI	GGWCC	2 cut(s)	320, 353
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	26, 337
SmoI	CTYRAG	2 cut(s)	26, 337
Sse9I	AATT	2 cut(s)	127, 231
SspMI	CTAG	2 cut(s)	264, 376
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	180
TaqI	TCGA	3 cut(s)	63, 99, 135
TasI	AATT	2 cut(s)	127, 231
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	2 cut(s)	27, 327
Tru9I	TTAA	2 cut(s)	27, 327
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	2 cut(s)	320, 353
XapI	RAATTY	1 cut(s)	127
XspI	CTAG	2 cut(s)	264, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.