Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002122.1

Orthogroup ID

OG0005942

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 767

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002122.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

aaagcaagggatgagctaggagatgttcaaggcctcaccgaagagaaagtggacaaggttgttgaggagtttctaaaagatgccaaagagaatttggttgaagctaatggctggcctataaacttctctgcttacgtagtgtccaaggcagccatgaatgcttacaccagagttctggcaaagagccaccccgaaattgcaatcaatgcagttagtcctggctacactagcactgacatgaccttcaacgttggcgggcactctgttgaagaaggtgcaaagggtcctgttaagctggccttgagccctgaaggtggaccttctggcctctattttgaccagcttgaagtctcatcgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00902 ko01110 map00902 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

120

Amino Acids

12.86

Weight (kDa)

4.74

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005942)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0198481 RchiOBHm_Chr7g0198501 RchiOBHm_Chr7g0198531 RchiOBHm_Chr7g0198561
rosa_laevigata	RLG00000003863 RLG00000003865
rosa_multiflora	Rmu_sc0002122.1_g000001 Rmu_sc0004229.1_g000021 Rmu_sc0004229.1_g000027 Rmu_sc0030219.1_g000001 Rmu_ssc0000486.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257650 Rroxscaffold_3G00257680
rosa_rugosa	Rorug07G0058300 Rorug07G0058400 Rorug07G0058500
rosa_samantha	Rh6AG149500 Rh6CG145500 Rh6DG134700 Rh7CG194200 Rh7CG194300 Rh7DG173900 Rh7DG174000 Rh7DG174100 Rh7DG249000
rosa_wichuraiana	Rw7G015030 Rw7G015040 Rw7G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	5 cut(s)	29, 101, 247, 269, 347
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	4 cut(s)	16, 104, 295, 343
AluI	AGCT	4 cut(s)	16, 104, 295, 343
Alw26I	GTCTC	1 cut(s)	355
AoxI	GGCC	4 cut(s)	31, 113, 297, 325
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	284, 317
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	284, 317
BaeGI	GKGCMC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	17, 228
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	284, 317
BmgT120I	GGNCC	2 cut(s)	284, 317
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	322
BsaAI	YACGTR	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	4 cut(s)	33, 115, 299, 327
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	33, 115, 299, 327
Bsp1286I	GDGCHC	2 cut(s)	261, 308
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	4 cut(s)	33, 115, 299, 327
BspLI	GGNNCC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	113, 257, 297
BstF5I	GGATG	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 206, 228
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	261
BstSNI	TACGTA	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	161
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuRI	GGCC	4 cut(s)	33, 115, 299, 327
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	113, 257, 297
Cfr13I	GGNCC	2 cut(s)	284, 317
CviAII	CATG	2 cut(s)	154, 238
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco105I	TACGTA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	284, 317
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	157, 241
FaiI	YATR	3 cut(s)	119, 155, 239
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FatI	CATG	2 cut(s)	153, 237
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	2 cut(s)	17, 228
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	33, 115, 299, 327
Hin1II	CATG	2 cut(s)	157, 241
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	2 cut(s)	52, 317
Hpy8I	GTNNAC	2 cut(s)	52, 317
HpyAV	CCTTC	4 cut(s)	253, 266, 305, 330
HpyCH4IV	ACGT	2 cut(s)	135, 249
HpyCH4V	TGCA	3 cut(s)	200, 209, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 206, 228
HpySE526I	ACGT	2 cut(s)	135, 249
Hsp92II	CATG	2 cut(s)	157, 241
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	17, 228
MaeII	ACGT	2 cut(s)	135, 249
MboII	GAAGA	2 cut(s)	53, 281
MhlI	GDGCHC	2 cut(s)	261, 308
MluCI	AATT	2 cut(s)	91, 195
MnlI	CCTC	3 cut(s)	44, 58, 338
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	158, 206, 228
NlaIII	CATG	2 cut(s)	157, 241
NlaIV	GGNNCC	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	284, 317
PspPPI	RGGWCCY	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	284, 317
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	2 cut(s)	261, 308
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	2 cut(s)	284, 317
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
SnaBI	TACGTA	1 cut(s)	136
Sse9I	AATT	2 cut(s)	91, 195
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	2 cut(s)	17, 228
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	2 cut(s)	138, 252
TasI	AATT	2 cut(s)	91, 195
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	284, 317
XapI	RAATTY	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	17, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.