Rmu_sc0030219.1_g000001

Salutaridine reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030219.1
OG0005942
Physical Location & Seq
Reverse (-)
130 .. 786
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030219.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgatattaggacatattggacgtcttgttacgcatcagaaagcaagggatgagctaggagatgttcaaggcctcaccgaagagaaagtggacaaggttgttgaggagtttctgaaggatgcgaaagagaatttggttgaagctaatggctggcctataaacttctctgcttacgtagtgtccaaggcagccgtgaatgcttacaccagagttctggcaaagagccaccccgaaattgcaatcaatgcagttagtcctggctacactagcactgacatgaccttttacgttggcgggcactctgttgaagaaggtgcaaagggtcctgttaagctggccttgagccctgaaggtggaccttctggcctctattttgaccagcttgaagtctcatcattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00902 ko01110 map00902 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

133

Amino Acids

14.34

Weight (kDa)

5.14

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 25
AciI CCGC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 2 cut(s) 134, 369
AcyI GRCGYC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 4 cut(s) 68, 140, 308, 386
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 4 cut(s) 55, 143, 334, 382
AluI AGCT 4 cut(s) 55, 143, 334, 382
Alw26I GTCTC 1 cut(s) 394
AoxI GGCC 4 cut(s) 70, 152, 336, 364
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 323, 356
AsuHPI GGTGA 1 cut(s) 67
AvaII GGWCC 2 cut(s) 323, 356
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 2 cut(s) 56, 267
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 2 cut(s) 323, 356
BmgT120I GGNCC 2 cut(s) 323, 356
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 43, 109
BpuEI CTTGAG 1 cut(s) 361
BsaAI YACGTR 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 353
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 55, 124
BseLI CCNNNNNNNGG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 4 cut(s) 72, 154, 338, 366
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 394
BsmI GAATGC 1 cut(s) 202
BsnI GGCC 4 cut(s) 72, 154, 338, 366
Bsp1286I GDGCHC 2 cut(s) 300, 347
BspACI CCGC 1 cut(s) 294
BspANI GGCC 4 cut(s) 72, 154, 338, 366
BspLI GGNNCC 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 258
Bst6I CTCTTC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 152, 296, 336
BstF5I GGATG 2 cut(s) 55, 124
BstMAI GTCTC 1 cut(s) 394
BstMWI GCNNNNNNNGC 3 cut(s) 197, 245, 267
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSLI GKGCMC 1 cut(s) 300
BstSNI TACGTA 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 214
BsuRI GGCC 4 cut(s) 72, 154, 338, 366
BtsCI GGATG 2 cut(s) 55, 124
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 3 cut(s) 152, 296, 336
Cfr13I GGNCC 2 cut(s) 323, 356
CviAII CATG 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco105I TACGTA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 323, 356
Eco57I CTGAAG 2 cut(s) 134, 369
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 280
FaiI YATR 3 cut(s) 15, 158, 278
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FatI CATG 1 cut(s) 276
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 62, 131
FriOI GRGCYC 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 56, 267
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 4 cut(s) 72, 154, 338, 366
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 1 cut(s) 280
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 2 cut(s) 91, 356
Hpy188I TCNGA 2 cut(s) 39, 114
Hpy8I GTNNAC 2 cut(s) 91, 356
HpyAV CCTTC 4 cut(s) 109, 305, 344, 369
HpyCH4IV ACGT 3 cut(s) 22, 174, 288
HpyCH4V TGCA 3 cut(s) 239, 248, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 245, 267
HpySE526I ACGT 3 cut(s) 22, 174, 288
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 2 cut(s) 43, 109
MaeI CTAG 2 cut(s) 56, 267
MaeII ACGT 3 cut(s) 22, 174, 288
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 2 cut(s) 92, 320
MhlI GDGCHC 2 cut(s) 300, 347
MluCI AATT 2 cut(s) 130, 234
MnlI CCTC 3 cut(s) 83, 97, 377
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 197, 245, 267
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 324
PceI AGGCCT 1 cut(s) 72
PctI GAATGC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 2 cut(s) 323, 356
PspPPI RGGWCCY 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 189
Sau96I GGNCC 2 cut(s) 323, 356
ScrFI CCNGG 1 cut(s) 258
SduI GDGCHC 2 cut(s) 300, 347
SfaNI GCATC 2 cut(s) 43, 109
SinI GGWCC 2 cut(s) 323, 356
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SnaBI TACGTA 1 cut(s) 175
Sse9I AATT 2 cut(s) 130, 234
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 56, 267
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 3 cut(s) 25, 177, 291
TasI AATT 2 cut(s) 130, 234
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 277
TseI GCWGC 1 cut(s) 188
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 323, 356
XapI RAATTY 1 cut(s) 130
XspI CTAG 2 cut(s) 56, 267
ZraI GACGTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.