RchiOBHm_Chr7g0217061

GTP1/OBG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007549
Physical Location & Seq
Reverse (-)
34976715 .. 34977703
989 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19424

Sequence Viewer

Length: 291 bp
ATGGTTGCCAATTCCTTCATTCTATGGTCCCTCATTCTTTCCACAGGTGGCCATGGAGGTGATGTGGTGATATATGCTGATGAGGAGGAAGATACATTGCTGGAGTTTCACAAGAAAGGGAGGTACAATGCGAAGCGCGGCGGAAATGTGGCTGCTATGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGCTGCCCCAATTCTGCGCATTCCTGTGCCTGTAGGTTTGTGGAAGAATAGAATTCGGAAACTTTGTTTATTGAAGAATTTTGGTTGTATTCGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

96

Amino Acids

10.54

Weight (kDa)

9.62

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP1_OBG PF01018 15 - 77 3.5e-07 GTP1/OBG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 209
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 138, 141
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 2 cut(s) 243, 268
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 265
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 152, 194
ApoI RAATTY 2 cut(s) 243, 268
AspLEI GCGC 2 cut(s) 138, 210
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 71, 79
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 51
BbvI GCAGC 2 cut(s) 139, 181
BccI CCATC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 3 cut(s) 139, 153, 195
BlsI GCNGC 3 cut(s) 140, 154, 196
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse3DI GCAATG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 139, 181
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 1 cut(s) 51
BslFI GGGAC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 2 cut(s) 138, 141
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 2 cut(s) 138, 210
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 139, 181
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 52
CfoI GCGC 2 cut(s) 138, 210
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 51, 152
CviKI_1 RGCY 2 cut(s) 51, 152
CviQI GTAC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 49
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 56
FaiI YATR 5 cut(s) 25, 54, 73, 75, 158
FaqI GGGAC 1 cut(s) 13
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 139, 153, 195
Fsp4HI GCNGC 3 cut(s) 139, 153, 195
FspI TGCGCA 1 cut(s) 209
GlaI GCGC 2 cut(s) 137, 209
GluI GCNGC 3 cut(s) 139, 153, 195
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 51
HhaI GCGC 2 cut(s) 138, 210
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 2 cut(s) 136, 208
HinP1I GCGC 2 cut(s) 136, 208
HphI GGTGA 2 cut(s) 71, 79
Hpy188I TCNGA 2 cut(s) 249, 285
HpyAV CCTTC 1 cut(s) 25
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 2 cut(s) 136, 208
LpnPI CCDG 4 cut(s) 30, 86, 228, 234
Lsp1109I GCAGC 2 cut(s) 139, 181
MboII GAAGA 3 cut(s) 101, 247, 277
MfeI CAATTG 1 cut(s) 176
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 5 cut(s) 10, 176, 201, 243, 268
MluNI TGGCCA 1 cut(s) 51
MnlI CCTC 6 cut(s) 41, 50, 76, 79, 114, 181
Mox20I TGGCCA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 51
MslI CAYNNNNRTG 2 cut(s) 57, 215
Msp20I TGGCCA 1 cut(s) 51
MunI CAATTG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 210
MvnI CGCG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 52
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 29
NsbI TGCGCA 1 cut(s) 209
PctI GAATGC 1 cut(s) 210
PkrI GCNGC 3 cut(s) 140, 154, 196
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 27
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 57, 215
SatI GCNGC 3 cut(s) 139, 153, 195
Sau96I GGNCC 1 cut(s) 27
SetI ASST 5 cut(s) 49, 61, 125, 173, 229
SfcI CTRYAG 1 cut(s) 222
SgeI CNNG 7 cut(s) 57, 65, 113, 124, 149, 227, 233
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 57, 215
Sse9I AATT 5 cut(s) 10, 176, 201, 243, 268
SsiI CCGC 2 cut(s) 138, 141
StyI CCWWGG 1 cut(s) 52
TasI AATT 5 cut(s) 10, 176, 201, 243, 268
TauI GCSGC 1 cut(s) 141
TseI GCWGC 2 cut(s) 152, 194
TspDTI ATGAA 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 243, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.