Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

82191987 .. 82195346

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG478200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTAGTAGAAGGATCAGATAGAGGATGGAAGGGAATCAGCAAAAACAGAAGAAGGAGATGCCATGACAACAATTATAGGACCATAATTGATAAGGGAGATTACCCAAACAATGCAAATCCTCTTTGTCTTATGCCGAGGACATCATTGGGATTACGCAAACAATGCAAATTCATGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTCGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACCAGCAACAAGGATCAAATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGTGATCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAGTATCCTCGCTACCTTAATTGGAGGGATTAGCTTGGTAGAAATGCCAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGAGCAAGCCTAATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

192

Amino Acids

21.8

Weight (kDa)

9.62

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	22, 292
AcsI	RAATTY	3 cut(s)	170, 221, 289
AcuI	CTGAAG	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	206, 221
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	3 cut(s)	301, 405, 532
AluI	AGCT	3 cut(s)	301, 405, 532
AlwI	GGATC	2 cut(s)	22, 292
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	298, 515
ApoI	RAATTY	3 cut(s)	170, 221, 289
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	81, 484
AvaII	GGWCC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	310, 502
BccI	CCATC	3 cut(s)	21, 305, 436
BciVI	GTATCC	2 cut(s)	308, 386
BclI	TGATCA	1 cut(s)	327
BfaI	CTAG	2 cut(s)	533, 577
BfuI	GTATCC	2 cut(s)	308, 386
BisI	GCNGC	3 cut(s)	241, 299, 516
BlsI	GCNGC	3 cut(s)	242, 300, 517
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	81, 484
BmsI	GCATC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	137, 487
BsaWI	WCCGGW	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	137, 487
BseGI	GGATG	4 cut(s)	32, 316, 330, 558
BseJI	GATNNNNATC	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	177, 354
BseXI	GCAGC	2 cut(s)	310, 502
BshFI	GGCC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	319
BsnI	GGCC	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	14, 284, 327, 573
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	2 cut(s)	178, 353
BspPI	GGATC	2 cut(s)	22, 292
BspQI	GCTCTTC	1 cut(s)	522
BssECI	CCNNGG	2 cut(s)	137, 487
BssMI	GATC	4 cut(s)	14, 284, 327, 573
BssT1I	CCWWGG	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	374, 522
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	2 cut(s)	186, 340
BstF5I	GGATG	4 cut(s)	32, 316, 330, 558
BstKTI	GATC	4 cut(s)	17, 287, 330, 576
BstMBI	GATC	4 cut(s)	14, 284, 327, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 304
BstV1I	GCAGC	2 cut(s)	310, 502
BsuI	GTATCC	2 cut(s)	308, 386
BsuRI	GGCC	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	32, 316, 330, 558
Cac8I	GCNNGC	1 cut(s)	560
Cfr13I	GGNCC	2 cut(s)	81, 484
CviAII	CATG	2 cut(s)	65, 175
CviJI	RGCY	8 cut(s)	243, 301, 405, 446, 486, 515, 532, 562
CviKI_1	RGCY	8 cut(s)	243, 301, 405, 446, 486, 515, 532, 562
DdeI	CTNAG	2 cut(s)	186, 340
DpnI	GATC	4 cut(s)	16, 286, 329, 575
DpnII	GATC	4 cut(s)	14, 284, 327, 573
Eam1104I	CTCTTC	2 cut(s)	374, 522
EarI	CTCTTC	2 cut(s)	374, 522
Eco130I	CCWWGG	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	355
EcoO109I	RGGNCCY	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	2 cut(s)	68, 178
FatI	CATG	2 cut(s)	64, 174
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	241, 299, 516
FokI	GGATG	4 cut(s)	39, 317, 323, 565
Fsp4HI	GCNGC	3 cut(s)	241, 299, 516
FspBI	CTAG	2 cut(s)	533, 577
GluI	GCNGC	3 cut(s)	241, 299, 516
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	2 cut(s)	68, 178
HinfI	GANTC	3 cut(s)	36, 254, 348
HpaII	CCGG	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	6 cut(s)	5, 25, 48, 200, 204, 373
HpyCH4V	TGCA	2 cut(s)	116, 168
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 304
HpyF3I	CTNAG	2 cut(s)	186, 340
Hsp92II	CATG	2 cut(s)	68, 178
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	14, 284, 327, 573
LguI	GCTCTTC	1 cut(s)	522
LpnPI	CCDG	6 cut(s)	222, 243, 287, 293, 332, 432
Lsp1109I	GCAGC	2 cut(s)	310, 502
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	2 cut(s)	533, 577
MalI	GATC	4 cut(s)	16, 286, 329, 575
MboI	GATC	4 cut(s)	14, 284, 327, 573
MboII	GAAGA	3 cut(s)	63, 361, 539
MluCI	AATT	6 cut(s)	73, 87, 170, 221, 289, 390
MnlI	CCTC	7 cut(s)	17, 132, 132, 181, 377, 389, 389
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	165, 304
NdeII	GATC	4 cut(s)	14, 284, 327, 573
NlaIII	CATG	2 cut(s)	68, 178
NmeAIII	GCCGAG	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	36, 254, 348
PkrI	GCNGC	3 cut(s)	242, 300, 517
PspPI	GGNCC	2 cut(s)	81, 484
RseI	CAYNNNNRTG	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	3 cut(s)	241, 299, 516
Sau3AI	GATC	4 cut(s)	14, 284, 327, 573
Sau96I	GGNCC	2 cut(s)	81, 484
SetI	ASST	5 cut(s)	303, 389, 407, 534, 573
SfaNI	GCATC	1 cut(s)	50
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	458
Sse9I	AATT	6 cut(s)	73, 87, 170, 221, 289, 390
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	509
SspMI	CTAG	2 cut(s)	533, 577
StyI	CCWWGG	1 cut(s)	487
TasI	AATT	6 cut(s)	73, 87, 170, 221, 289, 390
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	36, 254, 348
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseI	GCWGC	2 cut(s)	298, 515
TspDTI	ATGAA	2 cut(s)	163, 540
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	3 cut(s)	170, 221, 289
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	2 cut(s)	533, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.