Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

14738742 .. 14746712

Gene Structure 7971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007225

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTCTCCATTGGTCAGTGTCTATGTTGCGAATCGGTGCTCGGATAAGATCACTAAGCTCGCAGATAATGTCTACGTCTGTCGCTCTGGATCGCTATGGCAGCCTGCTATTGTCAAAGTTGTTGCTAATCTCATCAGGCTACTGTCATATGGAAACAAGATTTATGGAGTTCCGCTTGGCGGCACAGTCATAAAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGAATTCTTTGATCAAGCATGGAGAGAAGGAATGACTAAGGACGAAGCGGAGCTCTTTTGTGCCTTATTGCAAAAGTTGGTTGTGAAGGCAGTTTCCCTAGCCATTGCACGAGATGGAGCTAGTGGTGGTGTTGTCCGCACTGTTGTGTATTACAGCGGTGGGCACTTGAGCGACTCAACTGACAGTGGCACTAATGACGCAAAGAAAATTGGTGCTGAAGAAGATTTTGAGAATTTTCGTGGTTGCTTCAAAGATAAAAATATGCAAGCCCAAGGTGTGGATCCCAAGAGGGGTTGGGGATTTTGTGGTGTGCACAAGGGGAAGGTTGAGAAGGAGAAGGTCAGGAGGAGAGGATTGTTGAAGAGGGACTTCGGTGGGTCCCTCATTCTTCCCACAGGTGGCCATGGAGGTGATGTGGTGATATATGCTGATGAGGAGGAAGATACATTGCTGAAGTTTCACAAGAAAGGGAGGTACAATGCGAAGCGCGGCGGAAATGTGGCTGCTATGGGGGTTTTGACCTCCCAATTGAGAGATGGAGTTGCTGCCCCAACTCTGCGCATTCCTGTGCCTGTAGGTACTATTGTGAAGCGGAAACGAGGGACGATGTTGCATGATCTAGCCCAGCCAGGTGATGAAATCCTTGTAGCGAGGGGCGGACAAGGATGGATTAGCTTGGTAGAAATGCTAAAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGATATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCTTGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

362

Amino Acids

39.36

Weight (kDa)

9.5

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	50 - 128	1.7e-09	Proteasome subunit
GTP1_OBG	PF01018	211 - 302	1.8e-16	GTP1/OBG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	797
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	726
AciI	CCGC	9 cut(s)	173, 180, 284, 373, 393, 726, 729, 829, 894
AclWI	GGATC	3 cut(s)	97, 512, 525
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	2 cut(s)	239, 469
AcuI	CTGAAG	2 cut(s)	474, 710
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	713, 817
AfiI	CCNNNNNNNGG	4 cut(s)	179, 514, 527, 635
AgsI	TTSAA	2 cut(s)	487, 598
AjnI	CCWGG	1 cut(s)	865
AleI	CACNNNNGTG	2 cut(s)	380, 965
AluBI	AGCT	6 cut(s)	58, 289, 356, 912, 1039, 1069
AluI	AGCT	6 cut(s)	58, 289, 356, 912, 1039, 1069
Alw21I	GWGCWC	3 cut(s)	41, 291, 552
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	548
AlwI	GGATC	3 cut(s)	97, 512, 525
AoxI	GGCC	2 cut(s)	637, 991
ApaLI	GTGCAC	1 cut(s)	548
ApeKI	GCWGC	4 cut(s)	100, 740, 782, 1022
ApoI	RAATTY	2 cut(s)	239, 469
AspLEI	GCGC	3 cut(s)	199, 726, 798
AspS9I	GGNCC	2 cut(s)	615, 991
AsuHPI	GGTGA	3 cut(s)	659, 667, 881
AvaII	GGWCC	1 cut(s)	615
BaeGI	GKGCMC	2 cut(s)	402, 552
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BalI	TGGCCA	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	3 cut(s)	41, 291, 552
BbvI	GCAGC	4 cut(s)	112, 727, 769, 1009
BccI	CCATC	5 cut(s)	344, 767, 897, 943, 1054
BciT130I	CCWGG	1 cut(s)	867
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	5 cut(s)	335, 357, 857, 1040, 1084
BfmI	CTRYAG	1 cut(s)	810
BfoI	RGCGCY	1 cut(s)	200
BisI	GCNGC	6 cut(s)	101, 181, 727, 741, 783, 1023
BlsI	GCNGC	6 cut(s)	102, 182, 728, 742, 784, 1024
Bme1390I	CCNGG	1 cut(s)	867
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	2 cut(s)	615, 991
BmiI	GGNNCC	5 cut(s)	198, 223, 519, 616, 617
BmrFI	CCNGG	1 cut(s)	867
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	508, 640, 994
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 514, 527, 635
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	2 cut(s)	339, 683
BseBI	CCWGG	1 cut(s)	867
BseDI	CCNNGG	3 cut(s)	508, 640, 994
BseGI	GGATG	2 cut(s)	908, 1065
BseLI	CCNNNNNNNGG	4 cut(s)	179, 514, 527, 635
BseMI	GCAATG	2 cut(s)	339, 683
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	598, 686
BseSI	GKGCMC	2 cut(s)	402, 552
BseXI	GCAGC	4 cut(s)	112, 727, 769, 1009
BseYI	CCCAGC	1 cut(s)	861
Bsh1236I	CGCG	1 cut(s)	726
BshFI	GGCC	2 cut(s)	639, 993
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	3 cut(s)	41, 291, 552
BslFI	GGGAC	3 cut(s)	601, 617, 853
BslI	CCNNNNNNNGG	4 cut(s)	179, 514, 527, 635
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	601, 617, 853
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	2 cut(s)	639, 993
Bsp1286I	GDGCHC	4 cut(s)	41, 291, 402, 552
Bsp143I	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	9 cut(s)	173, 180, 284, 373, 393, 726, 729, 829, 894
BspANI	GGCC	2 cut(s)	639, 993
BspFNI	CGCG	1 cut(s)	726
BspLI	GGNNCC	5 cut(s)	198, 223, 519, 616, 617
BspPI	GGATC	3 cut(s)	97, 512, 525
BspQI	GCTCTTC	1 cut(s)	1029
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	339, 683
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	508, 640, 994
BssMI	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
BssNI	GRCGYC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	3 cut(s)	508, 640, 994
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	867
Bst4CI	ACNGT	4 cut(s)	144, 187, 379, 422
Bst6I	CTCTTC	2 cut(s)	593, 1029
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	60, 105, 504, 1067
BstDEI	CTNAG	2 cut(s)	54, 273
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	2 cut(s)	908, 1065
BstFNI	CGCG	1 cut(s)	726
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	3 cut(s)	199, 726, 798
BstKTI	GATC	6 cut(s)	51, 92, 250, 520, 856, 1083
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 203
BstNI	CCWGG	1 cut(s)	867
BstSCI	CCNGG	1 cut(s)	865
BstSFI	CTRYAG	1 cut(s)	810
BstSLI	GKGCMC	2 cut(s)	402, 552
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	4 cut(s)	112, 727, 769, 1009
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	639, 993
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	908, 1065
BtsIMutI	CAGTG	3 cut(s)	22, 375, 427
Cac8I	GCNNGC	4 cut(s)	60, 105, 504, 1067
CfoI	GCGC	3 cut(s)	199, 726, 798
Cfr13I	GGNCC	2 cut(s)	615, 991
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	712, 816
CviAII	CATG	3 cut(s)	255, 641, 851
CviQI	GTAC	2 cut(s)	712, 816
DdeI	CTNAG	2 cut(s)	54, 273
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	6 cut(s)	50, 91, 249, 519, 855, 1082
DpnII	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	593, 1029
EarI	CTCTTC	2 cut(s)	593, 1029
EciI	GGCGGA	2 cut(s)	744, 909
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	3 cut(s)	508, 640, 994
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	615
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	474, 710
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	2 cut(s)	615, 991
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	865
EcoT14I	CCWWGG	3 cut(s)	508, 640, 994
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	3 cut(s)	508, 640, 994
FaeI	CATG	3 cut(s)	258, 644, 854
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	3 cut(s)	601, 617, 853
FatI	CATG	3 cut(s)	254, 640, 850
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	6 cut(s)	101, 181, 727, 741, 783, 1023
FokI	GGATG	2 cut(s)	915, 1072
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	6 cut(s)	101, 181, 727, 741, 783, 1023
FspBI	CTAG	5 cut(s)	335, 357, 857, 1040, 1084
FspI	TGCGCA	1 cut(s)	797
GlaI	GCGC	3 cut(s)	198, 725, 797
GluI	GCNGC	6 cut(s)	101, 181, 727, 741, 783, 1023
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	639, 993
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	3 cut(s)	199, 726, 798
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	3 cut(s)	258, 644, 854
Hin6I	GCGC	3 cut(s)	197, 724, 796
HinP1I	GCGC	3 cut(s)	197, 724, 796
HindIII	AAGCTT	1 cut(s)	1067
HinfI	GANTC	2 cut(s)	31, 410
HphI	GGTGA	3 cut(s)	659, 667, 881
Hpy166II	GTNNAC	2 cut(s)	73, 550
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	87, 580
Hpy8I	GTNNAC	2 cut(s)	73, 550
HpyAV	CCTTC	5 cut(s)	257, 316, 553, 562, 568
HpyCH4III	ACNGT	4 cut(s)	144, 187, 379, 422
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	307, 344, 502, 550, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 203
HpyF3I	CTNAG	2 cut(s)	54, 273
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	258, 644, 854
HspAI	GCGC	3 cut(s)	197, 724, 796
KasI	GGCGCC	1 cut(s)	196
KflI	GGGWCCC	1 cut(s)	615
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
LguI	GCTCTTC	1 cut(s)	1029
LmnI	GCTCC	3 cut(s)	227, 286, 353
Lsp1109I	GCAGC	4 cut(s)	112, 727, 769, 1009
MaeI	CTAG	5 cut(s)	335, 357, 857, 1040, 1084
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	6 cut(s)	50, 91, 249, 519, 855, 1082
MboI	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
MboII	GAAGA	6 cut(s)	467, 470, 610, 617, 689, 1046
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	4 cut(s)	41, 291, 402, 552
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	4 cut(s)	239, 444, 469, 764
MluNI	TGGCCA	1 cut(s)	639
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	404
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MslI	CAYNNNNRTG	4 cut(s)	380, 645, 803, 965
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	867
MunI	CAATTG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	867
MvnI	CGCG	1 cut(s)	726
MwoI	GCNNNNNNNGC	2 cut(s)	100, 203
NarI	GGCGCC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	640
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
NlaIII	CATG	3 cut(s)	258, 644, 854
NlaIV	GGNNCC	5 cut(s)	198, 223, 519, 616, 617
NsbI	TGCGCA	1 cut(s)	797
OliI	CACNNNNGTG	2 cut(s)	380, 965
PciSI	GCTCTTC	1 cut(s)	1029
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	514
PkrI	GCNGC	6 cut(s)	102, 182, 728, 742, 784, 1024
PleI	GAGTC	1 cut(s)	404
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	865
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	865
PspN4I	GGNNCC	5 cut(s)	198, 223, 519, 616, 617
PspPI	GGNCC	2 cut(s)	615, 991
PspPPI	RGGWCCY	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	713, 817
RsaNI	GTAC	2 cut(s)	712, 816
RseI	CAYNNNNRTG	4 cut(s)	380, 645, 803, 965
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	1029
SatI	GCNGC	6 cut(s)	101, 181, 727, 741, 783, 1023
Sau3AI	GATC	6 cut(s)	48, 89, 247, 517, 853, 1080
Sau96I	GGNCC	2 cut(s)	615, 991
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	867
SduI	GDGCHC	4 cut(s)	41, 291, 402, 552
SfcI	CTRYAG	1 cut(s)	810
SfoI	GGCGCC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	615
SmiMI	CAYNNNNRTG	4 cut(s)	380, 645, 803, 965
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	4 cut(s)	239, 444, 469, 764
SsiI	CCGC	9 cut(s)	173, 180, 284, 373, 393, 726, 729, 829, 894
SspDI	GGCGCC	1 cut(s)	196
SspI	AATATT	1 cut(s)	1016
SspMI	CTAG	5 cut(s)	335, 357, 857, 1040, 1084
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	865
StyI	CCWWGG	3 cut(s)	508, 640, 994
TaaI	ACNGT	4 cut(s)	144, 187, 379, 422
TaiI	ACGT	1 cut(s)	78
TasI	AATT	4 cut(s)	239, 444, 469, 764
TauI	GCSGC	2 cut(s)	183, 729
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	3 cut(s)	22, 382, 427
TseI	GCWGC	4 cut(s)	100, 740, 782, 1022
TspDTI	ATGAA	3 cut(s)	252, 888, 1047
TspRI	CASTG	3 cut(s)	22, 382, 427
Van91I	CCANNNNNTGG	1 cut(s)	514
VneI	GTGCAC	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	615
XapI	RAATTY	2 cut(s)	239, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	5 cut(s)	335, 357, 857, 1040, 1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.