Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

82219960 .. 82224095

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00060100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCGGAGCTCTGGCTAAGACTTGTACTGCGCCTCTTGCTCGGCTTACTATACTCTTTCAGATACAAGGCATGCACTCGGATGTTGCAACTATGAGAAAAGCTAGCTTATGGCGTGAGGCCTCAAGAATTGCTGGTGATGCATTTTCTTTCTTCTTTTATCTCGGCTCCAGACTTTCAAGGAATATTGGAAAGGTGGAAGCCTGGAATCTCATTGGATGTGACCTCGTTGCTGTAGGCCAAATTGAGGGCCTTGGATTACAACAAGTTATGAAATATTTGGTTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

115

Amino Acids

12.7

Weight (kDa)

9.12

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	4 cut(s)	11, 104, 108, 301
AluI	AGCT	4 cut(s)	11, 104, 108, 301
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	4 cut(s)	3, 120, 238, 250
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	205
BfaI	CTAG	3 cut(s)	105, 302, 346
BfmI	CTRYAG	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	130
BmtI	GCTAGC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	3 cut(s)	88, 224, 327
BseLI	CCNNNNNNNGG	1 cut(s)	247
BshFI	GGCC	4 cut(s)	5, 122, 240, 252
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	247
BsnI	GGCC	4 cut(s)	5, 122, 240, 252
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	342
BspANI	GGCC	4 cut(s)	5, 122, 240, 252
BspLI	GGNNCC	1 cut(s)	169
BspOI	GCTAGC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	74, 106, 329
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	88, 224, 327
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 140
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	5, 122, 240, 252
BtsCI	GGATG	3 cut(s)	88, 224, 327
Cac8I	GCNNGC	3 cut(s)	74, 106, 329
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	73
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	253
Eco147I	AGGCCT	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	76
FaiI	YATR	6 cut(s)	53, 74, 95, 112, 272, 294
FatI	CATG	1 cut(s)	72
FokI	GGATG	3 cut(s)	95, 231, 334
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	3 cut(s)	105, 302, 346
GlaI	GCGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	5, 122, 240, 252
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	63, 82
Hpy188III	TCNNGA	2 cut(s)	126, 171
HpyCH4V	TGCA	3 cut(s)	76, 89, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 140
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	342
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	8, 173
LpnPI	CCDG	5 cut(s)	19, 120, 184, 190, 217
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	3 cut(s)	105, 302, 346
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	2 cut(s)	145, 308
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	2 cut(s)	129, 243
MnlI	CCTC	5 cut(s)	45, 112, 133, 236, 241
Mph1103I	ATGCAT	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	38, 140
NdeII	GATC	1 cut(s)	342
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	169
NmeAIII	GCCGAG	2 cut(s)	22, 144
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	7 cut(s)	13, 106, 110, 198, 228, 303, 342
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	2 cut(s)	129, 243
SseBI	AGGCCT	1 cut(s)	122
SspI	AATATT	2 cut(s)	187, 278
SspMI	CTAG	3 cut(s)	105, 302, 346
SstI	GAGCTC	1 cut(s)	13
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	253
TasI	AATT	2 cut(s)	129, 243
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	287, 309
XceI	RCATGY	1 cut(s)	76
XspI	CTAG	3 cut(s)	105, 302, 346
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.