Rroxscaffold_5G00367330

GTP1/OBG

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
49178350 .. 49178703
354 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00367330.1

Sequence Viewer

Length: 165 bp
ATGCCGGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTACTGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCACGATAACGTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

6.16

Weight (kDa)

8.82

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 22, 133
BfaI CTAG 2 cut(s) 119, 163
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 5
BsnI GGCC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 159
BspANI GGCC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 70
CviJI RGCY 4 cut(s) 32, 72, 101, 118
CviKI_1 RGCY 4 cut(s) 32, 72, 101, 118
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaiI YATR 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 119, 163
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 5
HpaII CCGG 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 156
Kzo9I GATC 1 cut(s) 159
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 2 cut(s) 119, 163
MaeII ACGT 1 cut(s) 156
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 1 cut(s) 5
NdeII GATC 1 cut(s) 159
OliI CACNNNNGTG 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 70
SetI ASST 2 cut(s) 120, 159
SgeI CNNG 7 cut(s) 17, 28, 86, 95, 131, 157, 161
SmiMI CAYNNNNRTG 1 cut(s) 44
SspI AATATT 1 cut(s) 95
SspMI CTAG 2 cut(s) 119, 163
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 159
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 126
XspI CTAG 2 cut(s) 119, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.