Rh5AG068100

Haloacid dehalogenase-like hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007549
Physical Location & Seq
Reverse (-)
5731423 .. 5734053
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG068100.1

Sequence Viewer

Length: 255 bp
ATGTTGCACTGTGAAACTGACTTTGTCATTCTCTTGCAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGCCGCGGAGCGAGCAAAGCTGATCCATCAGACGGTTGTAATTAACCAAAGTGGCAACAAAATCAGGCTTCAGTGCACTCAAAATGCGAAGAACACCCAACGTGCTGTGTGGGGTTTGGGAATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HAD_2 Hydrolase_6 Hydrolase_like

Protein Analysis

84

Amino Acids

9.44

Weight (kDa)

8.88

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 129, 131
AclWI GGATC 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 88, 145
AluI AGCT 2 cut(s) 88, 145
Alw21I GWGCWC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 199
AlwI GGATC 1 cut(s) 142
AoxI GGCC 2 cut(s) 40, 126
ApaLI GTGCAC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 103, 159
BfaI CTAG 1 cut(s) 89
BisI GCNGC 2 cut(s) 72, 129
BlsI GCNGC 2 cut(s) 73, 130
BmgT120I GGNCC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 43, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 43, 129
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 42, 128
BsiHKAI GWGCWC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 2 cut(s) 42, 128
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 129, 131
BspANI GGCC 2 cut(s) 42, 128
BspFNI CGCG 1 cut(s) 131
BspPI GGATC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 43, 129
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 11, 160
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 116, 138
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 137, 142
BstSLI GKGCMC 1 cut(s) 203
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 42, 128
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 7, 203
Cac8I GCNNGC 2 cut(s) 116, 138
Cfr13I GGNCC 1 cut(s) 40
Cfr42I CCGCGG 1 cut(s) 132
CviJI RGCY 7 cut(s) 42, 71, 88, 118, 128, 145, 193
CviKI_1 RGCY 7 cut(s) 42, 71, 88, 118, 128, 145, 193
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaiI YATR 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 72, 129
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 72, 129
FspBI CTAG 1 cut(s) 89
GluI GCNGC 2 cut(s) 72, 129
HaeIII GGCC 2 cut(s) 42, 128
HinfI GANTC 1 cut(s) 246
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 201
HpyCH4III ACNGT 2 cut(s) 11, 160
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 7, 37, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 142
HpySE526I ACGT 1 cut(s) 226
KspI CCGCGG 1 cut(s) 132
Kzo9I GATC 1 cut(s) 147
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 23, 132, 175
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 226
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 95, 226
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 165
MseI TTAA 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 131
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 137, 142
NdeII GATC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 73, 130
PspPI GGNCC 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 23
SacII CCGCGG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 72, 129
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 40
SduI GDGCHC 1 cut(s) 203
SetI ASST 3 cut(s) 90, 147, 229
Sfr303I CCGCGG 1 cut(s) 132
SgrBI CCGCGG 1 cut(s) 132
Sse9I AATT 1 cut(s) 165
SsiI CCGC 2 cut(s) 129, 131
SspI AATATT 1 cut(s) 65
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 11, 160
TaiI ACGT 1 cut(s) 229
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 2 cut(s) 14, 203
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 2 cut(s) 14, 203
Tth111I GACNNNGTC 1 cut(s) 23
VneI GTGCAC 1 cut(s) 199
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.