Rroxscaffold_5G00345400

GTP1/OBG

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
15795509 .. 15800627
5119 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00345400.1

Sequence Viewer

Length: 165 bp
ATGCGAGAGCGTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGAGTCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

6.23

Weight (kDa)

9.42

Isoelectric Point (pI)

20.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 88
BccI CCATC 2 cut(s) 22, 133
BfaI CTAG 2 cut(s) 119, 163
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BseGI GGATG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 146
CviJI RGCY 4 cut(s) 32, 101, 118, 148
CviKI_1 RGCY 4 cut(s) 32, 101, 118, 148
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
FaiI YATR 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 119, 163
GluI GCNGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 2 cut(s) 119, 163
MboII GAAGA 1 cut(s) 125
MlyI GAGTC 1 cut(s) 79
MslI CAYNNNNRTG 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 108
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 1 cut(s) 102
SchI GAGTC 1 cut(s) 79
SetI ASST 2 cut(s) 120, 159
SgeI CNNG 7 cut(s) 17, 28, 86, 95, 131, 157, 161
SmiMI CAYNNNNRTG 1 cut(s) 44
SspI AATATT 1 cut(s) 95
SspMI CTAG 2 cut(s) 119, 163
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 126
XspI CTAG 2 cut(s) 119, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.