Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

9473208 .. 9477101

Gene Structure 3894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGCGTCGATTACTACAAGGTTCTTCAAGTAGAACGGAGTGCCAAAGACGATGACTTGAAGAAAGCCTATCGCAAGCTCGCCATGAAATGGCACCCCGATAAAAACCCTAACAACAAGAAAGCCGCCGAAGCCAAATTCAAGCAAATCTCCGAAGCCTACGATATTTTGAGTGATCCCCAAAAGCGAGCGGTGTACGATCAGTACGGCGAGGAGGGTTTGAAGGCAGGGGCACCGCCGCCGGATTCGGGCTTTTCTGCCGGCGGGCAGGACGGTCCGACCACGTTCCGGTTCAATACCAGGAACCCGGATGATATATTTTCCGAGTTTTTCGGGTTTTCGGGTTTCGGACAAGGGATGCCGGACATGGGCCGGGCCGGCGGGTCCAGGCCGGGTGGGGCGTTCCCGAGGAGCATGTTTGGGGATGACATATTTGCTTCGTTTAGAGGCGCAGGTGAGCCCTCTGCTAATGTGCAGAGGAAAGCCCAGCCCATTGAGAGGACATTGCCCTGTACTCTGGAGGACTTGTATAAGGGCACCACCAAGAAGATGAAGATTTCCAGGGATGTTGCTGATTCTAGTGGGAGATCAACCACGGTTGAGGAAATTCTCACAATTGAGATCAAGCCAGGTTGGAAAAAAGGCACAAAAATCACTTTCCCAGAGAAGGGAAATGAGCAGCGAGGTGTTATACCAGCAGACCTTGTCTTTATTATTGATGAGAAACCTCATAGTCTTTTCAAGAGGGATGGGAACGATCTTATCGTCACTCAGAAGATATCTCTTGCCGAAGCTCTGACAGGTCACACAGCACAGCTGACAACCCTGGATGGGAGAAGTCTCACAGTGCCCATCAATTCTATTATCAGCCCCACCTATGAAGAAGTGGTGAAAGGGGAGGGAATGCCAATCCCCAAGGAACCTTCCAAAAAGGGGAACTTAAGAGTCAAGTTCAACATCAAGTTCCCTACCAAGCTTACCTCAGAGCAGAAAACCGGTATAAAGAGGTTATTAACGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAP

Protein Analysis

340

Amino Acids

37.47

Weight (kDa)

9.31

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	4.4e-27	DnaJ domain
DnaJ_C	PF01556	165 - 323	1e-42	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	3 cut(s)	93, 232, 536
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	6 cut(s)	126, 191, 236, 239, 264, 381
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	137, 606
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	3 cut(s)	197, 206, 514
AfiI	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 498, 667, 668, 831, 933
AflII	CTTAAG	1 cut(s)	940
AgeI	ACCGGT	1 cut(s)	995
AgsI	TTSAA	7 cut(s)	29, 61, 142, 223, 295, 742, 955
AjnI	CCWGG	5 cut(s)	299, 386, 560, 628, 825
AluBI	AGCT	4 cut(s)	79, 794, 817, 976
AluI	AGCT	4 cut(s)	79, 794, 817, 976
Alw26I	GTCTC	1 cut(s)	845
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	3 cut(s)	370, 375, 389
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	2 cut(s)	137, 606
AsiGI	ACCGGT	1 cut(s)	995
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	4 cut(s)	275, 370, 375, 384
AsuC2I	CCSGG	3 cut(s)	308, 374, 393
AsuHPI	GGTGA	2 cut(s)	467, 901
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	275, 384
BaeGI	GKGCMC	3 cut(s)	235, 539, 852
BanI	GGYRCC	3 cut(s)	93, 232, 536
BanII	GRGCYC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	3 cut(s)	743, 824, 860
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	5 cut(s)	301, 388, 562, 630, 827
BcnI	CCSGG	3 cut(s)	308, 374, 393
BcoDI	GTCTC	1 cut(s)	845
BfaI	CTAG	1 cut(s)	579
BfrI	CTTAAG	1 cut(s)	940
BfuAI	ACCTGC	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	3 cut(s)	126, 239, 680
BlsI	GCNGC	3 cut(s)	127, 240, 681
Bme1390I	CCNGG	8 cut(s)	301, 308, 374, 388, 393, 562, 630, 827
Bme18I	GGWCC	2 cut(s)	275, 384
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	4 cut(s)	275, 370, 375, 384
BmiI	GGNNCC	6 cut(s)	95, 234, 305, 385, 538, 921
BmrFI	CCNGG	8 cut(s)	301, 308, 374, 388, 393, 562, 630, 827
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	539
BpuMI	CCSGG	3 cut(s)	308, 374, 393
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	5 cut(s)	407, 561, 594, 825, 915
BsaWI	WCCGGW	2 cut(s)	288, 995
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 498, 667, 668, 831, 933
Bse118I	RCCGGY	3 cut(s)	260, 377, 995
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	5 cut(s)	301, 388, 562, 630, 827
BseDI	CCNNGG	5 cut(s)	407, 561, 594, 825, 915
BseGI	GGATG	6 cut(s)	316, 363, 430, 571, 754, 835
BseLI	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 498, 667, 668, 831, 933
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	2 cut(s)	785, 996
BseRI	GAGGAG	2 cut(s)	227, 424
BseSI	GKGCMC	3 cut(s)	235, 539, 852
BseXI	GCAGC	1 cut(s)	691
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	494
BshFI	GGCC	3 cut(s)	372, 377, 391
BshNI	GGYRCC	3 cut(s)	93, 232, 536
BshTI	ACCGGT	1 cut(s)	995
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 996
BslI	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 498, 667, 668, 831, 933
BsmAI	GTCTC	1 cut(s)	845
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	3 cut(s)	372, 377, 391
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	4 cut(s)	235, 462, 539, 852
Bsp143I	GATC	5 cut(s)	175, 199, 587, 621, 757
BspACI	CCGC	6 cut(s)	126, 191, 236, 239, 264, 381
BspANI	GGCC	3 cut(s)	372, 377, 391
BspCNI	CTCAG	2 cut(s)	784, 995
BspLI	GGNNCC	6 cut(s)	95, 234, 305, 385, 538, 921
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	3 cut(s)	93, 232, 536
BspTI	CTTAAG	1 cut(s)	940
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	3 cut(s)	260, 377, 995
BssAI	RCCGGY	3 cut(s)	260, 377, 995
BssECI	CCNNGG	5 cut(s)	407, 561, 594, 825, 915
BssMI	GATC	5 cut(s)	175, 199, 587, 621, 757
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	915
Bst2UI	CCWGG	5 cut(s)	301, 388, 562, 630, 827
Bst4CI	ACNGT	3 cut(s)	275, 598, 847
BstACI	GRCGYC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	940
BstC8I	GCNNGC	6 cut(s)	77, 81, 189, 262, 266, 379
BstDEI	CTNAG	2 cut(s)	771, 982
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	6 cut(s)	316, 363, 430, 571, 754, 835
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	5 cut(s)	178, 202, 590, 624, 760
BstMAI	GTCTC	1 cut(s)	845
BstMBI	GATC	5 cut(s)	175, 199, 587, 621, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 378
BstNI	CCWGG	5 cut(s)	301, 388, 562, 630, 827
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	8 cut(s)	299, 306, 372, 386, 391, 560, 628, 825
BstSLI	GKGCMC	3 cut(s)	235, 539, 852
BstV1I	GCAGC	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	372, 377, 391
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	6 cut(s)	316, 363, 430, 571, 754, 835
BtsIMutI	CAGTG	1 cut(s)	852
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	6 cut(s)	77, 81, 189, 262, 266, 379
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	3 cut(s)	260, 377, 995
Cfr13I	GGNCC	4 cut(s)	275, 370, 375, 384
CpoI	CGGWCCG	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	196, 205, 513
CspAI	ACCGGT	1 cut(s)	995
CspI	CGGWCCG	1 cut(s)	275
CviAII	CATG	3 cut(s)	85, 367, 415
CviQI	GTAC	3 cut(s)	196, 205, 513
DdeI	CTNAG	2 cut(s)	771, 982
DpnI	GATC	5 cut(s)	177, 201, 589, 623, 759
DpnII	GATC	5 cut(s)	175, 199, 587, 621, 757
Eco130I	CCWWGG	1 cut(s)	915
Eco24I	GRGCYC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	780
Eco47I	GGWCC	2 cut(s)	275, 384
Eco88I	CYCGRG	1 cut(s)	406
EcoRII	CCWGG	5 cut(s)	299, 386, 560, 628, 825
EcoRV	GATATC	1 cut(s)	780
EcoT14I	CCWWGG	1 cut(s)	915
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	915
FaeI	CATG	3 cut(s)	88, 370, 418
FalI	AAGNNNNNCTT	2 cut(s)	923, 955
FatI	CATG	3 cut(s)	84, 366, 414
FauI	CCCGC	2 cut(s)	257, 374
Fnu4HI	GCNGC	3 cut(s)	126, 239, 680
FokI	GGATG	6 cut(s)	323, 370, 437, 578, 761, 842
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	126, 239, 680
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	3 cut(s)	126, 239, 680
GsaI	CCCAGC	1 cut(s)	490
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	3 cut(s)	372, 377, 391
HapII	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 996
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	88, 370, 418
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	3 cut(s)	245, 575, 945
HpaII	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 996
HphI	GGTGA	2 cut(s)	467, 901
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	7 cut(s)	154, 279, 325, 350, 774, 798, 985
Hpy188III	TCNNGA	3 cut(s)	406, 518, 742
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	11, 1021
HpyAV	CCTTC	3 cut(s)	217, 661, 933
HpyCH4III	ACNGT	3 cut(s)	275, 598, 847
HpyCH4IV	ACGT	2 cut(s)	284, 1016
HpyCH4V	TGCA	1 cut(s)	475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 378
HpyF3I	CTNAG	2 cut(s)	771, 982
HpySE526I	ACGT	2 cut(s)	284, 1016
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	88, 370, 418
HspAI	GCGC	1 cut(s)	450
KroI	GCCGGC	2 cut(s)	260, 377
KroNI	GCCGGC	2 cut(s)	262, 379
Kzo9I	GATC	5 cut(s)	175, 199, 587, 621, 757
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	2 cut(s)	284, 1016
MaeIII	GTNAC	2 cut(s)	766, 803
MalI	GATC	5 cut(s)	177, 201, 589, 623, 759
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	5 cut(s)	175, 199, 587, 621, 757
MboII	GAAGA	6 cut(s)	17, 73, 559, 565, 787, 893
MfeI	CAATTG	1 cut(s)	615
MhlI	GDGCHC	4 cut(s)	235, 462, 539, 852
MluCI	AATT	4 cut(s)	137, 606, 615, 856
MlyI	GAGTC	1 cut(s)	954
MmeI	TCCRAC	2 cut(s)	302, 614
MroNI	GCCGGC	2 cut(s)	260, 377
MseI	TTAA	2 cut(s)	941, 1013
MspA1I	CMGCKG	1 cut(s)	817
MspCI	CTTAAG	1 cut(s)	940
MspI	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 996
MspR9I	CCNGG	8 cut(s)	301, 308, 374, 388, 393, 562, 630, 827
MunI	CAATTG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	5 cut(s)	301, 388, 562, 630, 827
MwoI	GCNNNNNNNGC	2 cut(s)	131, 378
NaeI	GCCGGC	2 cut(s)	262, 379
NciI	CCSGG	3 cut(s)	308, 374, 393
NdeII	GATC	5 cut(s)	175, 199, 587, 621, 757
NgoMIV	GCCGGC	2 cut(s)	260, 377
NlaIII	CATG	3 cut(s)	88, 370, 418
NlaIV	GGNNCC	6 cut(s)	95, 234, 305, 385, 538, 921
NmuCI	GTSAC	2 cut(s)	766, 803
NspI	RCATGY	1 cut(s)	418
PaqCI	CACCTGC	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PctI	GAATGC	1 cut(s)	909
PdiI	GCCGGC	2 cut(s)	262, 379
PfeI	GAWTC	2 cut(s)	245, 575
PflFI	GACNNNGTC	1 cut(s)	704
PflMI	CCANNNNNTGG	1 cut(s)	90
PinAI	ACCGGT	1 cut(s)	995
PkrI	GCNGC	3 cut(s)	127, 240, 681
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
Psp6I	CCWGG	5 cut(s)	299, 386, 560, 628, 825
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	5 cut(s)	299, 386, 560, 628, 825
PspN4I	GGNNCC	6 cut(s)	95, 234, 305, 385, 538, 921
PspPI	GGNCC	4 cut(s)	275, 370, 375, 384
PsyI	GACNNNGTC	1 cut(s)	704
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	3 cut(s)	197, 206, 514
RsaNI	GTAC	3 cut(s)	196, 205, 513
Rsr2I	CGGWCCG	1 cut(s)	275
RsrII	CGGWCCG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	941, 1013
SatI	GCNGC	3 cut(s)	126, 239, 680
Sau3AI	GATC	5 cut(s)	175, 199, 587, 621, 757
Sau96I	GGNCC	4 cut(s)	275, 370, 375, 384
SchI	GAGTC	1 cut(s)	954
ScrFI	CCNGG	8 cut(s)	301, 308, 374, 388, 393, 562, 630, 827
SduI	GDGCHC	4 cut(s)	235, 462, 539, 852
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	2 cut(s)	275, 384
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
Sse9I	AATT	4 cut(s)	137, 606, 615, 856
SsiI	CCGC	6 cut(s)	126, 191, 236, 239, 264, 381
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	8 cut(s)	299, 306, 372, 386, 391, 560, 628, 825
StyI	CCWWGG	1 cut(s)	915
TaaI	ACNGT	3 cut(s)	275, 598, 847
TaiI	ACGT	2 cut(s)	287, 1019
TaqI	TCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	137, 606, 615, 856
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	2 cut(s)	128, 241
TfiI	GAWTC	2 cut(s)	245, 575
Tru1I	TTAA	2 cut(s)	941, 1013
Tru9I	TTAA	2 cut(s)	941, 1013
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	2 cut(s)	766, 803
TseI	GCWGC	1 cut(s)	679
Tsp45I	GTSAC	2 cut(s)	766, 803
TspDTI	ATGAA	3 cut(s)	101, 566, 894
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	852
Tth111I	GACNNNGTC	1 cut(s)	704
Van91I	CCANNNNNTGG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	940
VpaK11BI	GGWCC	2 cut(s)	275, 384
XapI	RAATTY	2 cut(s)	137, 606
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.