Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007549

Physical Location & Seq

Genomic Coordinates Reverse (-)

35165285 .. 35168243

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGGGCACCGGCCGTTCGTGGGGAGGAGGCGAACTGGTCCGGGCTTTGTTTCACTTCATTTGGTTGCCGGATGAGGGAGAATTCGCTTGGAGAAGAAAATGGCGATTTTCGGAAGGGAATCAGCAAAAACAGAAGAAGGAGATGCCATGACAACAATTATAGGACCATAATTGATAAGGTGAATATATACATTGTTAAGGGCTTGAACCATAATCTGGATCAATTTTACCTCCTCATTCAGTTTCATTTGAAGTTATTGATTCTGGTGAGAAATCCGTGTGACACAAAAGCTGTATCTGATCTCAAAGGGTATTGTAAAGACAGGTACAGTAGAATGAGGCTGAGATTCACTATGTATTTTGTTGTTCTATCTGCATTCTATAATCAGATTACGCAAACAATGCAAATTCCTCTGTCTTATGCTGAGGACATTATTGGGGTTGAAGGAAGGAGTATTGAATTTATTCGTCGTAGTAGTGGAGCCTTGTTAACTGTACAAGAGAGCAGGGGACTACCTGATGAAATTACAGTGGAAATAAAAGGCACCTCATCACAGGTTCAGGCGGCTCAACAACTGATTCAGGAAGTTATAGCAACTTGCAACAAGGATCAGATTCCAAGCAGCTATGGCAGGATGGATACCGGATTGAGGTCATCCTACTCTCAGTTAGATTCTATATCTTACCCTTCCTCTTCAATTAGCTTGGTAGAAATGCCAGAGCTTAGCAAGAAAAAGTTGATGGCTTTGACCACTAATGTGATGAGAGATGATAGTGATAAGGGCCTTGGATTACAAGTTGTGAAATATTTGGCTGCCAAATATGAAGAGCTAGGGTGTGAAGTGAAATGGATGGGCAAGCCTGATAAGGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0022414 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048438 GO:0048467 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

292

Amino Acids

33.25

Weight (kDa)

9.06

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	132 - 196	1.7e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007549)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145031 RchiOBHm_Chr7g0217061
rosa_laevigata	RLG00000007225
rosa_multiflora	Rmu_sc0002205.1_g000037
rosa_roxburghii	Rroxscaffold_1G00060100 Rroxscaffold_3G00222180 Rroxscaffold_4G00312300 Rroxscaffold_5G00345400 Rroxscaffold_5G00346530 Rroxscaffold_5G00367330
rosa_rugosa	Rorug02G0170400 Rorug02G0305000 Rorug03G0116400 Rorug03G0116500 Rorug03G0116600 Rorug04G0037800
rosa_samantha	Rh2DG657600 Rh3CG032400 Rh5AG068100 Rh5AG401400 Rh5AG439600 Rh5AG478200 Rh7AG425700
rosa_wichuraiana	Rw2G039080 Rw3G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	7, 545
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	2 cut(s)	228, 618
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	82, 408, 461
AfaI	GTAC	2 cut(s)	329, 498
AfiI	CCNNNNNNNGG	4 cut(s)	21, 76, 217, 651
AgsI	TTSAA	5 cut(s)	208, 253, 446, 461, 699
AleI	CACNNNNGTG	1 cut(s)	758
AluBI	AGCT	5 cut(s)	293, 627, 705, 724, 832
AluI	AGCT	5 cut(s)	293, 627, 705, 724, 832
AlwI	GGATC	2 cut(s)	228, 618
AoxI	GGCC	2 cut(s)	12, 784
ApeKI	GCWGC	2 cut(s)	624, 815
ApoI	RAATTY	3 cut(s)	82, 408, 461
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	39, 165, 784
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	193, 280
AvaII	GGWCC	2 cut(s)	39, 165
BaeGI	GKGCMC	1 cut(s)	10
BanI	GGYRCC	2 cut(s)	7, 545
BbvCI	CCTCAGC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	636, 802
BccI	CCATC	3 cut(s)	631, 736, 847
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	2 cut(s)	833, 877
BfuI	GTATCC	1 cut(s)	634
BisI	GCNGC	3 cut(s)	567, 625, 816
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	3 cut(s)	568, 626, 817
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	2 cut(s)	39, 165
BmgT120I	GGNCC	3 cut(s)	39, 165, 784
BmiI	GGNNCC	3 cut(s)	9, 484, 547
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	725
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	787
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 76, 217, 651
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	787
BseGI	GGATG	4 cut(s)	78, 642, 656, 858
BseLI	CCNNNNNNNGG	4 cut(s)	21, 76, 217, 651
BseMII	CTCAG	3 cut(s)	335, 417, 680
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	2 cut(s)	41, 224
BseSI	GKGCMC	1 cut(s)	10
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	636, 802
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	14, 786
BshNI	GGYRCC	2 cut(s)	7, 545
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	11, 42, 70, 645
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	4 cut(s)	21, 76, 217, 651
BsmFI	GGGAC	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	14, 786
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	220, 301, 610
Bsp1720I	GCTNAGC	1 cut(s)	725
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	14, 786
BspCNI	CTCAG	3 cut(s)	336, 418, 679
BspLI	GGNNCC	3 cut(s)	9, 484, 547
BspPI	GGATC	2 cut(s)	228, 618
BspQI	GCTCTTC	1 cut(s)	822
BspT107I	GGYRCC	2 cut(s)	7, 545
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	787
BssMI	GATC	3 cut(s)	220, 301, 610
BssT1I	CCWWGG	1 cut(s)	787
Bst4CI	ACNGT	3 cut(s)	332, 496, 532
Bst6I	CTCTTC	2 cut(s)	700, 822
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	860
BstDEI	CTNAG	4 cut(s)	344, 426, 666, 725
BstF5I	GGATG	4 cut(s)	78, 642, 656, 858
BstKTI	GATC	3 cut(s)	223, 304, 613
BstMBI	GATC	3 cut(s)	220, 301, 610
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 630
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	636, 802
BstZI	CGGCCG	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	14, 786
BtsCI	GGATG	4 cut(s)	78, 642, 656, 858
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	860
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	3 cut(s)	39, 165, 784
Csp6I	GTAC	2 cut(s)	328, 497
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	2 cut(s)	328, 497
DdeI	CTNAG	4 cut(s)	344, 426, 666, 725
DpnI	GATC	3 cut(s)	222, 303, 612
DpnII	GATC	3 cut(s)	220, 301, 610
EaeI	YGGCCR	1 cut(s)	12
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	700, 822
EarI	CTCTTC	2 cut(s)	700, 822
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	787
Eco47I	GGWCC	2 cut(s)	39, 165
Eco52I	CGGCCG	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	787
FaeI	CATG	1 cut(s)	152
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	567, 625, 816
FokI	GGATG	4 cut(s)	85, 643, 649, 865
Fsp4HI	GCNGC	3 cut(s)	567, 625, 816
FspBI	CTAG	2 cut(s)	833, 877
GluI	GCNGC	3 cut(s)	567, 625, 816
HaeIII	GGCC	2 cut(s)	14, 786
HapII	CCGG	4 cut(s)	11, 42, 70, 645
Hin1II	CATG	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	6 cut(s)	120, 262, 348, 580, 616, 674
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	4 cut(s)	11, 42, 70, 645
HphI	GGTGA	2 cut(s)	193, 280
Hpy166II	GTNNAC	2 cut(s)	492, 874
Hpy188I	TCNGA	4 cut(s)	114, 301, 390, 615
Hpy188III	TCNNGA	2 cut(s)	218, 584
Hpy8I	GTNNAC	2 cut(s)	492, 874
Hpy99I	CGWCG	1 cut(s)	474
HpyAV	CCTTC	5 cut(s)	109, 132, 440, 444, 699
HpyCH4III	ACNGT	3 cut(s)	332, 496, 532
HpyCH4V	TGCA	3 cut(s)	377, 406, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 630
HpyF3I	CTNAG	4 cut(s)	344, 426, 666, 725
Hsp92II	CATG	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	220, 301, 610
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	2 cut(s)	636, 802
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	2 cut(s)	833, 877
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	222, 303, 612
MboI	GATC	3 cut(s)	220, 301, 610
MboII	GAAGA	4 cut(s)	107, 147, 687, 839
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	8 cut(s)	82, 157, 171, 224, 408, 461, 525, 699
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	198, 491
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	4 cut(s)	11, 42, 70, 645
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	403, 630
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	3 cut(s)	220, 301, 610
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	3 cut(s)	9, 484, 547
NmuCI	GTSAC	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	6 cut(s)	120, 262, 348, 580, 616, 674
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	568, 626, 817
PspN4I	GGNNCC	3 cut(s)	9, 484, 547
PspPI	GGNCC	3 cut(s)	39, 165, 784
RsaI	GTAC	2 cut(s)	329, 498
RsaNI	GTAC	2 cut(s)	328, 497
RseI	CAYNNNNRTG	1 cut(s)	758
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	198, 491
SatI	GCNGC	3 cut(s)	567, 625, 816
Sau3AI	GATC	3 cut(s)	220, 301, 610
Sau96I	GGNCC	3 cut(s)	39, 165, 784
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	1 cut(s)	134
SinI	GGWCC	2 cut(s)	39, 165
SmiMI	CAYNNNNRTG	1 cut(s)	758
Sse9I	AATT	8 cut(s)	82, 157, 171, 224, 408, 461, 525, 699
SsiI	CCGC	1 cut(s)	566
SspI	AATATT	1 cut(s)	809
SspMI	CTAG	2 cut(s)	833, 877
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	3 cut(s)	332, 496, 532
TasI	AATT	8 cut(s)	82, 157, 171, 224, 408, 461, 525, 699
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	6 cut(s)	120, 262, 348, 580, 616, 674
Tru1I	TTAA	2 cut(s)	198, 491
Tru9I	TTAA	2 cut(s)	198, 491
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	624, 815
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	48, 236, 537, 840
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	39, 165
XapI	RAATTY	3 cut(s)	82, 408, 461
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	2 cut(s)	833, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.