Rorug02G0170400

GTP1/OBG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000182
Physical Location & Seq
Forward (+)
15327915 .. 15330962
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0170400.1

Sequence Viewer

Length: 696 bp
ATGGGCGATTCCGACTCCAATTCCAGCGGTGGTGCAGATTATGCAGAAATCATGGTAGTGCGTCACGGCGAAACGGCCTGGAACTCTGATGGTAGAATCCAGGGACATCTGGATGTTGAATTGAATGATGCTGGGAGGCAGCAAGCAGCTGCAGTGGGCAGTAGATTAGCCAAGGATCCTAAAATCTCTCTTGTATACTCCTCTGACTTGAAACGAGCTTATGAGACTGCTCAAATAATTGCAGCCAGGTGCGGTGGGCTAAATGTTGTAACAGATCCTGATTTACGAGAAAGACACTTGGGCGATCTTCAAGGCCTTGTATTTAGAGAAGCGGCCAAACTTAGTTCTAAGGCCTACCAGGCCTTTATATCTCACCGTACATGTCAAGATATTCCAGGTGGCGGAGAAAGTCTTGATCAACTTTATGACCGCTGCACATCTGCATTGGAGAGAATTGGTGGTAAGCACAAAGGAGAGCGAGTAGTTGTGGTCACTCATGGGGGTGTCATCAGATCACTGTACCAGCGGGCTTGCCCAAATGGCAGTTCCATAGGGAAAGTGGCCAATACATCGATCAACACATTTCACTTGTATGATGAGGACAAATGGACCATAAAATCCTGGGGTGATATTAGTCATCTGAAGGAAACAGATTATCTGGAATCAGGTTTTGGAGGGGACGGAACTTCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP1_OBG MMR_HSR1

Protein Analysis

231

Amino Acids

24.94

Weight (kDa)

5.9

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 17 - 210 1.5e-57 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AciI CCGC 6 cut(s) 27, 252, 332, 402, 430, 526
AclWI GGATC 3 cut(s) 170, 183, 269
AcoI YGGCCR 2 cut(s) 333, 561
AcuI CTGAAG 2 cut(s) 662, 672
AfaI GTAC 2 cut(s) 379, 521
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 380
AgsI TTSAA 4 cut(s) 119, 124, 211, 311
AjnI CCWGG 6 cut(s) 77, 99, 245, 357, 394, 620
AjuI GAANNNNNNNTTGG 4 cut(s) 529, 561, 654, 686
AluBI AGCT 2 cut(s) 149, 218
AluI AGCT 2 cut(s) 149, 218
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 3 cut(s) 170, 183, 269
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 6 cut(s) 75, 313, 333, 351, 360, 561
ApeKI GCWGC 5 cut(s) 139, 146, 149, 242, 432
AspS9I GGNCC 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 365, 638
AvaII GGWCC 1 cut(s) 609
BalI TGGCCA 1 cut(s) 563
BamHI GGATCC 1 cut(s) 175
BbvI GCAGC 5 cut(s) 136, 151, 158, 254, 419
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 82, 90
BciT130I CCWGG 6 cut(s) 79, 101, 247, 359, 396, 622
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 150
BglI GCCNNNNNGGC 2 cut(s) 359, 540
BisI GCNGC 6 cut(s) 140, 147, 150, 243, 333, 433
BlsI GCNGC 6 cut(s) 141, 148, 151, 244, 334, 434
Bme1390I CCNGG 6 cut(s) 79, 101, 247, 359, 396, 622
Bme18I GGWCC 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 6 cut(s) 79, 101, 247, 359, 396, 622
BmsI GCATC 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 100, 171, 621
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 401
BseBI CCWGG 6 cut(s) 79, 101, 247, 359, 396, 622
BseCI ATCGAT 1 cut(s) 572
BseDI CCNNGG 3 cut(s) 100, 171, 621
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 401
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 5 cut(s) 136, 151, 158, 254, 419
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 2 cut(s) 54, 418
BshFI GGCC 6 cut(s) 77, 315, 335, 353, 362, 563
BshVI ATCGAT 1 cut(s) 572
BslFI GGGAC 2 cut(s) 117, 692
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 117, 692
BsnI GGCC 6 cut(s) 77, 315, 335, 353, 362, 563
Bsp143I GATC 6 cut(s) 175, 274, 304, 415, 512, 573
BspACI CCGC 6 cut(s) 27, 252, 332, 402, 430, 526
BspANI GGCC 6 cut(s) 77, 315, 335, 353, 362, 563
BspDI ATCGAT 1 cut(s) 572
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 3 cut(s) 170, 183, 269
BssECI CCNNGG 3 cut(s) 100, 171, 621
BssMI GATC 6 cut(s) 175, 274, 304, 415, 512, 573
BssNAI GTATAC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 6 cut(s) 79, 101, 247, 359, 396, 622
Bst4CI ACNGT 2 cut(s) 377, 519
BstAPI GCANNNNNTGC 1 cut(s) 41
BstC8I GCNNGC 3 cut(s) 144, 528, 532
BstDEI CTNAG 2 cut(s) 341, 348
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 6 cut(s) 178, 277, 307, 418, 515, 576
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 6 cut(s) 175, 274, 304, 415, 512, 573
BstMWI GCNNNNNNNGC 3 cut(s) 41, 359, 540
BstNI CCWGG 6 cut(s) 79, 101, 247, 359, 396, 622
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 6 cut(s) 77, 99, 245, 357, 394, 620
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 5 cut(s) 136, 151, 158, 254, 419
BstX2I RGATCY 2 cut(s) 175, 274
BstYI RGATCY 2 cut(s) 175, 274
BstZ17I GTATAC 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 572
BsuRI GGCC 6 cut(s) 77, 315, 335, 353, 362, 563
BsuTUI ATCGAT 1 cut(s) 572
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 515
Cac8I GCNNGC 3 cut(s) 144, 528, 532
CaiI CAGNNNCTG 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 609
ClaI ATCGAT 1 cut(s) 572
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 378, 520
CviAII CATG 3 cut(s) 52, 381, 497
CviQI GTAC 2 cut(s) 378, 520
DdeI CTNAG 2 cut(s) 341, 348
DpnI GATC 6 cut(s) 177, 276, 306, 417, 514, 575
DpnII GATC 6 cut(s) 175, 274, 304, 415, 512, 573
EaeI YGGCCR 2 cut(s) 333, 561
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 3 cut(s) 315, 353, 362
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 2 cut(s) 662, 672
EcoRII CCWGG 6 cut(s) 77, 99, 245, 357, 394, 620
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 55, 384, 500
FaqI GGGAC 2 cut(s) 117, 692
FatI CATG 3 cut(s) 51, 380, 496
FauI CCCGC 1 cut(s) 519
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 140, 147, 150, 243, 333, 433
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 6 cut(s) 140, 147, 150, 243, 333, 433
GluI GCNGC 6 cut(s) 140, 147, 150, 243, 333, 433
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 6 cut(s) 77, 315, 335, 353, 362, 563
HgaI GACGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 55, 384, 500
HinfI GANTC 4 cut(s) 8, 14, 96, 662
HphI GGTGA 2 cut(s) 365, 638
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 5 cut(s) 13, 88, 205, 512, 642
Hpy188III TCNNGA 5 cut(s) 110, 278, 386, 413, 659
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 377, 519
HpyCH4V TGCA 6 cut(s) 35, 44, 152, 242, 435, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 359, 540
HpyF3I CTNAG 2 cut(s) 341, 348
Hsp92II CATG 3 cut(s) 55, 384, 500
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 6 cut(s) 175, 274, 304, 415, 512, 573
Lsp1109I GCAGC 5 cut(s) 136, 151, 158, 254, 419
LweI GCATC 1 cut(s) 118
MaeIII GTNAC 3 cut(s) 62, 268, 490
MalI GATC 6 cut(s) 177, 276, 306, 417, 514, 575
MboI GATC 6 cut(s) 175, 274, 304, 415, 512, 573
MboII GAAGA 1 cut(s) 299
MflI RGATCY 2 cut(s) 175, 274
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 4 cut(s) 19, 119, 237, 453
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 129, 211, 592, 668
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
MslI CAYNNNNRTG 4 cut(s) 56, 111, 501, 591
Msp20I TGGCCA 1 cut(s) 563
MspA1I CMGCKG 4 cut(s) 27, 149, 432, 526
MspR9I CCNGG 6 cut(s) 79, 101, 247, 359, 396, 622
MvaI CCWGG 6 cut(s) 79, 101, 247, 359, 396, 622
MwoI GCNNNNNNNGC 3 cut(s) 41, 359, 540
NdeII GATC 6 cut(s) 175, 274, 304, 415, 512, 573
NlaIII CATG 3 cut(s) 55, 384, 500
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 62, 490
NspI RCATGY 1 cut(s) 384
PceI AGGCCT 3 cut(s) 315, 353, 362
PciI ACATGT 1 cut(s) 380
PfeI GAWTC 3 cut(s) 8, 96, 662
PkrI GCNGC 6 cut(s) 141, 148, 151, 244, 334, 434
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PscI ACATGT 1 cut(s) 380
Psp6I CCWGG 6 cut(s) 77, 99, 245, 357, 394, 620
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 6 cut(s) 77, 99, 245, 357, 394, 620
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 609
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 175, 274
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 379, 521
RsaNI GTAC 2 cut(s) 378, 520
RseI CAYNNNNRTG 4 cut(s) 56, 111, 501, 591
SatI GCNGC 6 cut(s) 140, 147, 150, 243, 333, 433
Sau3AI GATC 6 cut(s) 175, 274, 304, 415, 512, 573
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 6 cut(s) 79, 101, 247, 359, 396, 622
SetI ASST 6 cut(s) 151, 220, 251, 400, 670, 694
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 150
SfiI GGCCNNNNNGGCC 1 cut(s) 359
SinI GGWCC 1 cut(s) 609
SmiMI CAYNNNNRTG 4 cut(s) 56, 111, 501, 591
Sse9I AATT 4 cut(s) 19, 119, 237, 453
SseBI AGGCCT 3 cut(s) 315, 353, 362
SsiI CCGC 6 cut(s) 27, 252, 332, 402, 430, 526
StuI AGGCCT 3 cut(s) 315, 353, 362
StyD4I CCNGG 6 cut(s) 77, 99, 245, 357, 394, 620
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 2 cut(s) 377, 519
TaqI TCGA 1 cut(s) 572
TasI AATT 4 cut(s) 19, 119, 237, 453
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 3 cut(s) 8, 96, 662
TscAI CASTG 2 cut(s) 159, 522
TseFI GTSAC 2 cut(s) 62, 490
TseI GCWGC 5 cut(s) 139, 146, 149, 242, 432
Tsp45I GTSAC 2 cut(s) 62, 490
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 2 cut(s) 159, 522
VpaK11BI GGWCC 1 cut(s) 609
XceI RCATGY 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.