Rh6AG015200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000182
Physical Location & Seq
Forward (+)
1568602 .. 1569410
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG015200.1

Sequence Viewer

Length: 594 bp
ATGTGTCTCCTATCTTTCGGCTTCCGTTCGATGACTCCCCATGTTGGTGTTTGTGATTTGAGAACTGATCTTTTCGGCGATTTCCATCATTTTGCCCCTACAATCCCCTGTTCTGAGAAGTTGATCATTCCCAAGATAAAGCTTTCTTCTTGGTTGCCGCACAGCTGTTTGATTACTTTGCTTTCTCACCACGTTCATAATTGTGCGATTCACTCTGCCCTGTGGGGCTATAGCTGGGGAACCAAGAACCCTAAGATTATCTTGCGTGATTGTATTGTTGATGACTTTATGTATGCCCCAAGCACTTCGACTAGTATTTATACTAGATCTTTTGAGGACTTCACTCACACAACTTATTTCCTTTCACGAACAATCTCTACTTCAAGCACCATGGCTTATAGTCCCAATTCCCAGGCTCATGTTTCCAGCCCTAGAAGACTTCCCCAAAATAGGACATACCCTCCCCTTCCCCGAAACACTAATTTCGATCCTATCCAGGTTAACATTGGGGATGAGTCCTTTGATGTTGATCGTTTTGTTGCCCAGATAGATTTGCCTCCCCCCCCCAAAGGGTGTCTTCTCTCATTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.29

Weight (kDa)

7.68

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 482
AfiI CCNNNNNNNGG 4 cut(s) 44, 450, 569, 570
AgsI TTSAA 1 cut(s) 384
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 2 cut(s) 411, 495
AluBI AGCT 3 cut(s) 142, 165, 234
AluI AGCT 3 cut(s) 142, 165, 234
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 442, 569
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 413, 497
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 11
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 3 cut(s) 312, 324, 432
BfmI CTRYAG 1 cut(s) 229
BglII AGATCT 1 cut(s) 326
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 413, 497
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 413, 497
BpiI GAAGAC 2 cut(s) 442, 569
BsaBI GATNNNNATC 2 cut(s) 84, 528
BsaJI CCNNGG 2 cut(s) 390, 411
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 450, 569, 570
Bse8I GATNNNNATC 2 cut(s) 84, 528
BseBI CCWGG 2 cut(s) 413, 497
BseDI CCNNGG 2 cut(s) 390, 411
BseGI GGATG 1 cut(s) 517
BseJI GATNNNNATC 2 cut(s) 84, 528
BseLI CCNNNNNNNGG 4 cut(s) 44, 450, 569, 570
BseMII CTCAG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 234
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 4 cut(s) 44, 450, 569, 570
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 387
Bsp143I GATC 5 cut(s) 67, 123, 326, 487, 529
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 390, 411
BssMI GATC 5 cut(s) 67, 123, 326, 487, 529
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 413, 497
BstDEI CTNAG 2 cut(s) 114, 252
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 5 cut(s) 70, 126, 329, 490, 532
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 5 cut(s) 67, 123, 326, 487, 529
BstNI CCWGG 2 cut(s) 413, 497
BstSCI CCNGG 2 cut(s) 411, 495
BstSFI CTRYAG 1 cut(s) 229
BstV2I GAAGAC 2 cut(s) 442, 569
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 1 cut(s) 517
CviAII CATG 3 cut(s) 41, 391, 419
CviJI RGCY 8 cut(s) 21, 142, 165, 228, 234, 395, 416, 429
CviKI_1 RGCY 8 cut(s) 21, 142, 165, 228, 234, 395, 416, 429
DdeI CTNAG 2 cut(s) 114, 252
DpnI GATC 5 cut(s) 69, 125, 328, 489, 531
DpnII GATC 5 cut(s) 67, 123, 326, 487, 529
Eco130I CCWWGG 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 411, 495
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 3 cut(s) 44, 394, 422
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 561, 593
FaqI GGGAC 1 cut(s) 387
FatI CATG 3 cut(s) 40, 390, 418
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 3 cut(s) 312, 324, 432
GluI GCNGC 1 cut(s) 158
GsaI CCCAGC 1 cut(s) 238
Hin1II CATG 3 cut(s) 44, 394, 422
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 3 cut(s) 34, 208, 515
HpaI GTTAAC 1 cut(s) 502
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 502
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 1 cut(s) 502
HpyAV CCTTC 1 cut(s) 476
HpyCH4IV ACGT 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 114, 252
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 44, 394, 422
Ksp22I TGATCA 1 cut(s) 123
KspAI GTTAAC 1 cut(s) 502
Kzo9I GATC 5 cut(s) 67, 123, 326, 487, 529
LpnPI CCDG 9 cut(s) 121, 220, 233, 398, 425, 439, 482, 509, 557
MaeI CTAG 3 cut(s) 312, 324, 432
MaeII ACGT 1 cut(s) 192
MalI GATC 5 cut(s) 69, 125, 328, 489, 531
MboI GATC 5 cut(s) 67, 123, 326, 487, 529
MboII GAAGA 3 cut(s) 138, 447, 569
MflI RGATCY 1 cut(s) 326
MluCI AATT 3 cut(s) 199, 406, 481
MlyI GAGTC 2 cut(s) 28, 524
MnlI CCTC 3 cut(s) 328, 471, 567
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 2 cut(s) 45, 201
MspA1I CMGCKG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 413, 497
MvaI CCWGG 2 cut(s) 413, 497
NcoI CCATGG 1 cut(s) 390
NdeII GATC 5 cut(s) 67, 123, 326, 487, 529
NlaIII CATG 3 cut(s) 44, 394, 422
NlaIV GGNNCC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 2 cut(s) 28, 523
PpsI GAGTC 2 cut(s) 28, 523
Psp6I CCWGG 2 cut(s) 411, 495
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 2 cut(s) 411, 495
PspN4I GGNNCC 1 cut(s) 241
PsrI GAACNNNNNNTAC 2 cut(s) 361, 393
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 165
RseI CAYNNNNRTG 2 cut(s) 45, 201
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 5 cut(s) 67, 123, 326, 487, 529
SchI GAGTC 2 cut(s) 28, 524
ScrFI CCNGG 2 cut(s) 413, 497
SetI ASST 5 cut(s) 144, 167, 195, 236, 501
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 2 cut(s) 45, 201
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 3 cut(s) 199, 406, 481
SsiI CCGC 1 cut(s) 158
SspMI CTAG 3 cut(s) 312, 324, 432
StyD4I CCNGG 2 cut(s) 411, 495
StyI CCWWGG 1 cut(s) 390
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 29, 308, 486
TasI AATT 3 cut(s) 199, 406, 481
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XspI CTAG 3 cut(s) 312, 324, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.