Rh7AG212200

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000182
Physical Location & Seq
Forward (+)
19545527 .. 19547465
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG212200.1

Sequence Viewer

Length: 900 bp
ATGGAAATTGACCTCAAAACCCCACTTAAAAGGGTTTTGGTTGTCTGCGAGGCTGATGAAGGGGACCTGCCCTTCGACTTGGTAAGCTCTCCTGCAAAGATTTTTGTTTCATATGAAGCTATCTTTGAAATTTGTTTTGAATGCAGAAGCCACAAACATGTTATCCGCAAGTGTCCCTATAAGAAGAAAGAGAGGCACTTTGTCATGGTGGACAAAGAAGAAGGGGATCAGGATGTGGAGCCTGAAGGAATGGAGGTTGACTCGGAAATCAGAAACTTGGCAACAGAAAAGGTAATGATCTACTTCCCACAACCGGCAAAGCCTGACATCAGGCTTGATGCAGCTGATGGCCCCAAGGACAACCACAATCCGCCTTCTCCTGGTTGGACTCCGGTGGGAAGAAGGAACCATACTGTGAGTAAACCTGCTGATACTGAAACAACCGACAATGCTACAGACAAGAATAAGGAGAAGTTTAAGGTCTATACTCGAAAGGGCAAGGAAGTGATGGCACCTAAGAAAACTACTAGGCAGGCTCTTATCAAGCCGCGGATAAGCTTCAAGGATGCTGCCAAAGGGCATGGCACTATTGTGATTCGTGACAAGGAAACTGATAGTGTTTTCAAAGCTCAGGGGCACAAGATGGCTGTCAGGGTTGTTGGAAGCTCATCCTCAAGTGAGGAGGTGTTTGAAAATTTTAATGATGCTAGGGCATCTGGCTTTGAGGAAGATGACAACATGAATGAATATGAGATCAAGATGATCAATGGAAAGAGGGCTTTGTTTGCTAAGGCTGAAAGCTCAGCAATGAGTTCTGGCTCCAGGAAACGCAATCGAGAAGAAAATGAGGATCAAAGCATGGTTGATGCTGGTGAAGCTGTTGGGGAGGGCAGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

299

Amino Acids

33.61

Weight (kDa)

5.92

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 75, 433
AccB1I GGYRCC 1 cut(s) 511
AccII CGCG 1 cut(s) 550
AciI CCGC 4 cut(s) 166, 371, 548, 550
AclWI GGATC 2 cut(s) 234, 858
AcsI RAATTY 2 cut(s) 129, 694
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 313, 380
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 5 cut(s) 128, 140, 562, 625, 692
AjnI CCWGG 2 cut(s) 379, 821
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 8 cut(s) 87, 119, 344, 558, 629, 666, 801, 878
AluI AGCT 8 cut(s) 87, 119, 344, 558, 629, 666, 801, 878
AlwI GGATC 2 cut(s) 234, 858
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 341, 569
ApoI RAATTY 2 cut(s) 129, 694
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspS9I GGNCC 2 cut(s) 64, 350
AsuHPI GGTGA 1 cut(s) 884
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 639
BanI GGYRCC 1 cut(s) 511
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
BbvI GCAGC 2 cut(s) 353, 556
BccI CCATC 3 cut(s) 341, 502, 637
BciT130I CCWGG 2 cut(s) 381, 823
BclI TGATCA 1 cut(s) 762
BfaI CTAG 2 cut(s) 528, 708
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 2 cut(s) 75, 433
BisI GCNGC 3 cut(s) 342, 548, 570
BlpI GCTNAGC 1 cut(s) 802
BlsI GCNGC 3 cut(s) 343, 549, 571
Bme1390I CCNGG 2 cut(s) 381, 823
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 2 cut(s) 64, 350
BmiI GGNNCC 6 cut(s) 65, 240, 352, 407, 513, 820
BmrFI CCNGG 2 cut(s) 381, 823
BmsI GCATC 5 cut(s) 328, 556, 694, 722, 856
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 1 cut(s) 805
Bpu10I CCTNAGC 2 cut(s) 630, 789
Bpu1102I GCTNAGC 1 cut(s) 802
BpuEI CTTGAG 1 cut(s) 658
BsaJI CCNNGG 2 cut(s) 354, 548
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 380
Bse118I RCCGGY 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 2 cut(s) 381, 823
BseDI CCNNGG 2 cut(s) 354, 548
BseGI GGATG 3 cut(s) 238, 571, 668
BseLI CCNNNNNNNGG 2 cut(s) 313, 380
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 2 cut(s) 644, 816
BseRI GAGGAG 1 cut(s) 695
BseSI GKGCMC 1 cut(s) 639
BseXI GCAGC 2 cut(s) 353, 556
Bsh1236I CGCG 1 cut(s) 550
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 511
BsiSI CCGG 2 cut(s) 314, 392
BslFI GGGAC 2 cut(s) 77, 159
BslI CCNNNNNNNGG 2 cut(s) 313, 380
BsmFI GGGAC 2 cut(s) 77, 159
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 639
Bsp143I GATC 5 cut(s) 226, 297, 753, 762, 850
Bsp1720I GCTNAGC 1 cut(s) 802
BspACI CCGC 4 cut(s) 166, 371, 548, 550
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 643, 815
BspFNI CGCG 1 cut(s) 550
BspLI GGNNCC 6 cut(s) 65, 240, 352, 407, 513, 820
BspMI ACCTGC 2 cut(s) 75, 433
BspPI GGATC 2 cut(s) 234, 858
BspT107I GGYRCC 1 cut(s) 511
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 354, 548
BssMI GATC 5 cut(s) 226, 297, 753, 762, 850
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 2 cut(s) 381, 823
Bst4CI ACNGT 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 4 cut(s) 516, 630, 789, 802
BstDSI CCRYGG 1 cut(s) 548
BstF5I GGATG 3 cut(s) 238, 571, 668
BstFNI CGCG 1 cut(s) 550
BstKTI GATC 5 cut(s) 229, 300, 756, 765, 853
BstMBI GATC 5 cut(s) 226, 297, 753, 762, 850
BstMWI GCNNNNNNNGC 2 cut(s) 785, 875
BstNI CCWGG 2 cut(s) 381, 823
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 379, 821
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 353, 556
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 548
BtsCI GGATG 3 cut(s) 238, 571, 668
BveI ACCTGC 2 cut(s) 75, 433
Cac8I GCNNGC 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 64, 350
Cfr42I CCGCGG 1 cut(s) 551
CviAII CATG 5 cut(s) 158, 205, 581, 739, 859
DdeI CTNAG 4 cut(s) 516, 630, 789, 802
DpnI GATC 5 cut(s) 228, 299, 755, 764, 852
DpnII GATC 5 cut(s) 226, 297, 753, 762, 850
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 379, 821
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 5 cut(s) 161, 208, 584, 742, 862
FaqI GGGAC 2 cut(s) 77, 159
FatI CATG 5 cut(s) 157, 204, 580, 738, 858
FauNDI CATATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 3 cut(s) 342, 548, 570
FokI GGATG 3 cut(s) 245, 578, 655
Fsp4HI GCNGC 3 cut(s) 342, 548, 570
FspBI CTAG 2 cut(s) 528, 708
GluI GCNGC 3 cut(s) 342, 548, 570
GsuI CTGGAG 1 cut(s) 805
HaeIII GGCC 1 cut(s) 351
HapII CCGG 2 cut(s) 314, 392
Hin1II CATG 5 cut(s) 161, 208, 584, 742, 862
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 3 cut(s) 260, 388, 595
HpaII CCGG 2 cut(s) 314, 392
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 211, 259, 422
Hpy188I TCNGA 2 cut(s) 265, 272
Hpy188III TCNNGA 4 cut(s) 230, 599, 757, 836
Hpy8I GTNNAC 3 cut(s) 211, 259, 422
HpyAV CCTTC 6 cut(s) 53, 82, 215, 239, 384, 396
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 95, 144, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 785, 875
HpyF3I CTNAG 4 cut(s) 516, 630, 789, 802
Hsp92II CATG 5 cut(s) 161, 208, 584, 742, 862
Ksp22I TGATCA 1 cut(s) 762
KspI CCGCGG 1 cut(s) 551
Kzo9I GATC 5 cut(s) 226, 297, 753, 762, 850
LmnI GCTCC 2 cut(s) 238, 824
Lsp1109I GCAGC 2 cut(s) 353, 556
LweI GCATC 5 cut(s) 328, 556, 694, 722, 856
MaeI CTAG 2 cut(s) 528, 708
MaeIII GTNAC 1 cut(s) 599
MalI GATC 5 cut(s) 228, 299, 755, 764, 852
MboI GATC 5 cut(s) 226, 297, 753, 762, 850
MboII GAAGA 5 cut(s) 196, 230, 411, 740, 851
MhlI GDGCHC 1 cut(s) 639
MluCI AATT 3 cut(s) 6, 129, 694
MlyI GAGTC 2 cut(s) 254, 382
MmeI TCCRAC 2 cut(s) 365, 640
MseI TTAA 3 cut(s) 27, 477, 699
MslI CAYNNNNRTG 2 cut(s) 156, 590
MspA1I CMGCKG 2 cut(s) 344, 550
MspI CCGG 2 cut(s) 314, 392
MspR9I CCNGG 2 cut(s) 381, 823
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 2 cut(s) 381, 823
MvnI CGCG 1 cut(s) 550
MwoI GCNNNNNNNGC 2 cut(s) 785, 875
NdeI CATATG 1 cut(s) 112
NdeII GATC 5 cut(s) 226, 297, 753, 762, 850
NlaIII CATG 5 cut(s) 161, 208, 584, 742, 862
NlaIV GGNNCC 6 cut(s) 65, 240, 352, 407, 513, 820
NmuCI GTSAC 1 cut(s) 599
NspI RCATGY 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 590
PciI ACATGT 1 cut(s) 157
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 595
PfoI TCCNGGA 1 cut(s) 821
PkrI GCNGC 3 cut(s) 343, 549, 571
PleI GAGTC 2 cut(s) 254, 382
PpsI GAGTC 2 cut(s) 254, 382
PpuMI RGGWCCY 1 cut(s) 64
PscI ACATGT 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 379, 821
PspGI CCWGG 2 cut(s) 379, 821
PspN4I GGNNCC 6 cut(s) 65, 240, 352, 407, 513, 820
PspPI GGNCC 2 cut(s) 64, 350
PspPPI RGGWCCY 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 156, 590
SacII CCGCGG 1 cut(s) 551
SaqAI TTAA 3 cut(s) 27, 477, 699
SatI GCNGC 3 cut(s) 342, 548, 570
Sau3AI GATC 5 cut(s) 226, 297, 753, 762, 850
Sau96I GGNCC 2 cut(s) 64, 350
SchI GAGTC 2 cut(s) 254, 382
ScrFI CCNGG 2 cut(s) 381, 823
SduI GDGCHC 1 cut(s) 639
SfaNI GCATC 5 cut(s) 328, 556, 694, 722, 856
SfcI CTRYAG 1 cut(s) 453
Sfr303I CCGCGG 1 cut(s) 551
SgrBI CCGCGG 1 cut(s) 551
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 156, 590
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
Sse9I AATT 3 cut(s) 6, 129, 694
SsiI CCGC 4 cut(s) 166, 371, 548, 550
SspMI CTAG 2 cut(s) 528, 708
StyD4I CCNGG 2 cut(s) 379, 821
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 3 cut(s) 75, 490, 835
TasI AATT 3 cut(s) 6, 129, 694
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 3 cut(s) 27, 477, 699
Tru9I TTAA 3 cut(s) 27, 477, 699
TseFI GTSAC 1 cut(s) 599
TseI GCWGC 2 cut(s) 341, 569
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 5 cut(s) 72, 99, 129, 755, 759
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 2 cut(s) 129, 694
XceI RCATGY 1 cut(s) 161
XspI CTAG 2 cut(s) 528, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.