Rh4AG071400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000182
Physical Location & Seq
Reverse (-)
14686085 .. 14686667
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG071400.1

Sequence Viewer

Length: 483 bp
ATGGAGGATGCACACTATGTCCTGGAAAACCGTCCTTGGTTTGTGAAAGGGCGCATTTTCCACATCAGAAGATGGTCCCTCAATTTCGACCCTGTCAACTCTACGATTGAGTCTCTGTTTGTTTGGGAAGTGGAACAGCTCTTTGTTGTGGTGGGCCGAGCTGAGTCGGATGACGATATTGAATCTGTTCCAACTGAAGTGGGACCAGAGCTGCTTGAGCTAGTTTCGGAAAAAGTCATGTTATACTTTCCCCAACCAATCAAGAATGATGTGGCTTTTGAGGAACCTGAGGCCAACAATGTTGATCTCAATCCTCCTTCGCCAGGATGGAAGCTGGTCCAAAGAAGCAAAGGCAAAGTGCTCGACAAGGAGGCTAACCCTAAATTGAAGTTAGTAAAGGCGGGAAAAAGTTACAGGGATACTGTCAAAGGTGCTGGGAACATCATCATAGGCAATGGTGGGAGAGATTTCTCTGCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00020 ko00630 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230
Pfam Domains
Protein Families
DUF4283 RVT_3

Protein Analysis

160

Amino Acids

18.1

Weight (kDa)

5.08

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 401, 476
AcuI CTGAAG 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 2 cut(s) 182, 388
AjnI CCWGG 2 cut(s) 21, 322
AluBI AGCT 5 cut(s) 139, 161, 211, 220, 334
AluI AGCT 5 cut(s) 139, 161, 211, 220, 334
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 117
AoxI GGCC 2 cut(s) 154, 291
ApeKI GCWGC 1 cut(s) 211
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 4 cut(s) 75, 154, 203, 337
AvaII GGWCC 3 cut(s) 75, 203, 337
AxyI CCTNAGG 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 66, 321
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 2 cut(s) 23, 324
BciVI GTATCC 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 2 cut(s) 23, 324
Bme18I GGWCC 3 cut(s) 75, 203, 337
BmgT120I GGNCC 4 cut(s) 75, 154, 203, 337
BmiI GGNNCC 3 cut(s) 77, 204, 285
BmrFI CCNGG 2 cut(s) 23, 324
BpuEI CTTGAG 1 cut(s) 236
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse21I CCTNAGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 460
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 23, 324
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 13, 175, 332
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 2 cut(s) 153, 279
BseXI GCAGC 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 434
BshFI GGCC 2 cut(s) 156, 293
BsiHKAI GWGCWC 1 cut(s) 363
BslFI GGGAC 2 cut(s) 61, 216
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 61, 216
BsnI GGCC 2 cut(s) 156, 293
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 2 cut(s) 401, 476
BspANI GGCC 2 cut(s) 156, 293
BspCNI CTCAG 2 cut(s) 154, 280
BspLI GGNNCC 3 cut(s) 77, 204, 285
BsrDI GCAATG 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 23, 324
Bst4CI ACNGT 2 cut(s) 32, 424
BstDEI CTNAG 2 cut(s) 162, 288
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 3 cut(s) 13, 175, 332
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 23, 324
BstSCI CCNGG 2 cut(s) 21, 322
BstV1I GCAGC 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 156, 293
BtsCI GGATG 3 cut(s) 13, 175, 332
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 4 cut(s) 75, 154, 203, 337
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 1 cut(s) 238
CviJI RGCY 9 cut(s) 139, 156, 161, 211, 220, 275, 293, 334, 374
CviKI_1 RGCY 9 cut(s) 139, 156, 161, 211, 220, 275, 293, 334, 374
DdeI CTNAG 2 cut(s) 162, 288
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 35
Eco47I GGWCC 3 cut(s) 75, 203, 337
Eco57I CTGAAG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoRII CCWGG 2 cut(s) 21, 322
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 241
FaiI YATR 4 cut(s) 18, 239, 244, 449
FaqI GGGAC 2 cut(s) 61, 216
FatI CATG 1 cut(s) 237
FauI CCCGC 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 3 cut(s) 20, 182, 339
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 221
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 438
HaeIII GGCC 2 cut(s) 156, 293
HhaI GCGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 110, 164, 182
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 68, 169, 229
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 327
HpyCH4III ACNGT 2 cut(s) 32, 424
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 162, 288
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 304
Lsp1109I GCAGC 1 cut(s) 198
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 410
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 82, 383
MlyI GAGTC 2 cut(s) 119, 173
MmeI TCCRAC 2 cut(s) 147, 215
MnlI CCTC 5 cut(s) 89, 274, 283, 324, 364
MroXI GAANNNNTTC 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 23, 324
MvaI CCWGG 2 cut(s) 23, 324
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 3 cut(s) 77, 204, 285
NmeAIII GCCGAG 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 21
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 2 cut(s) 118, 172
PpsI GAGTC 2 cut(s) 118, 172
Psp6I CCWGG 2 cut(s) 21, 322
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 2 cut(s) 21, 322
PspN4I GGNNCC 3 cut(s) 77, 204, 285
PspPI GGNCC 4 cut(s) 75, 154, 203, 337
PsyI GACNNNGTC 1 cut(s) 92
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 4 cut(s) 75, 154, 203, 337
SchI GAGTC 2 cut(s) 119, 173
ScrFI CCNGG 2 cut(s) 23, 324
SduI GDGCHC 1 cut(s) 363
SetI ASST 7 cut(s) 141, 163, 213, 222, 289, 336, 433
SinI GGWCC 3 cut(s) 75, 203, 337
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 82, 383
SsiI CCGC 2 cut(s) 401, 476
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 21, 322
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 32, 424
TaqI TCGA 2 cut(s) 87, 363
TasI AATT 2 cut(s) 82, 383
TfiI GAWTC 1 cut(s) 182
TseI GCWGC 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 3 cut(s) 75, 203, 337
XagI CCTNNNNNAGG 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.