Rw7G025210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000182
Physical Location & Seq
Forward (+)
31535856 .. 31538371
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G025210.1

Sequence Viewer

Length: 597 bp
ATGGCCAAGTATGAGAATATTAAGAGTCTGTTTGCAGAACATTTTTCCTTGGTCTTCCCTCAACCTATTCCTGCTCCGACCCCTATAGAAGGTGATAACTCTGTTGATGGGGCATCGTGGAAAATCGTGTCTCGAAAAGGGAAGGGCAAAGGTTTCACTTATCCTAAACAGGGGGTTATCCCCAATAATCAGAAAGCTATGTTAAAGCCTGGCAAGTATTTCAAGGAGGCAGTTGCAAATAATGGGGCTGGGCCCTCTGGAGTCCCAAAGAATAAGGAAGTGCTGGTTGTTTCTGATGATTCGTCACAAGAAGTGGATCAATACATTAATGCAGAGGAGCCTCCTCGCCAAGGCGAGCTGGATATGCTCCTTGGTGAAGCTGCTGGGTTTGAAACTTTTAGCCCAGGGTTTCAGAATCGTCGGAATACTATGCGTGTACGACGACGAAGACGAGGAGGACGGCGAGGCCGAGGCCTTGTGGTAGAAATAAGAGTTGCTCCGCACATTAGGAGAGGAGGATTCTCATTCAGGGTGCGCAGCGAGGATTCCGAAGCTTTCCGGTTGGGAGAAACCCTTGTGGCGGCGGCGAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.83

Weight (kDa)

10.08

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 536
AciI CCGC 3 cut(s) 500, 581, 584
AclWI GGATC 1 cut(s) 324
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 4 cut(s) 89, 170, 350, 580
AgsI TTSAA 2 cut(s) 223, 392
AjnI CCWGG 2 cut(s) 208, 403
AluBI AGCT 4 cut(s) 197, 358, 380, 554
AluI AGCT 4 cut(s) 197, 358, 380, 554
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 324
AoxI GGCC 4 cut(s) 3, 251, 466, 472
ApaI GGGCCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 380, 537
AseI ATTAAT 1 cut(s) 327
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 2 cut(s) 251, 252
AsuHPI GGTGA 2 cut(s) 104, 386
BaeGI GKGCMC 1 cut(s) 255
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 46, 454
BbvI GCAGC 2 cut(s) 367, 549
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 2 cut(s) 210, 405
BcoDI GTCTC 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 381, 538, 582, 585
BlsI GCNGC 4 cut(s) 382, 539, 583, 586
Bme1390I CCNGG 2 cut(s) 210, 405
BmgT120I GGNCC 2 cut(s) 251, 252
BmiI GGNNCC 2 cut(s) 253, 339
BmrFI CCNGG 2 cut(s) 210, 405
BmsI GCATC 1 cut(s) 122
BpiI GAAGAC 2 cut(s) 46, 454
BpmI CTGGAG 1 cut(s) 279
BsaJI CCNNGG 6 cut(s) 48, 349, 370, 403, 404, 469
BsaWI WCCGGW 1 cut(s) 558
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 170, 350, 580
BseBI CCWGG 2 cut(s) 210, 405
BseDI CCNNGG 6 cut(s) 48, 349, 370, 403, 404, 469
BseLI CCNNNNNNNGG 4 cut(s) 89, 170, 350, 580
BseRI GAGGAG 4 cut(s) 333, 350, 468, 528
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 367, 549
BseYI CCCAGC 2 cut(s) 248, 383
BshFI GGCC 4 cut(s) 5, 253, 468, 474
BsiSI CCGG 1 cut(s) 559
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 89, 170, 350, 580
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 4 cut(s) 5, 253, 468, 474
Bsp120I GGGCCC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 316
BspACI CCGC 3 cut(s) 500, 581, 584
BspANI GGCC 4 cut(s) 5, 253, 468, 474
BspLI GGNNCC 2 cut(s) 253, 339
BspPI GGATC 1 cut(s) 324
BssECI CCNNGG 6 cut(s) 48, 349, 370, 403, 404, 469
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 3 cut(s) 48, 349, 370
Bst2UI CCWGG 2 cut(s) 210, 405
BstC8I GCNNGC 1 cut(s) 356
BstENI CCTNNNNNAGG 2 cut(s) 87, 348
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 2 cut(s) 210, 405
BstSCI CCNGG 2 cut(s) 208, 403
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 367, 549
BstV2I GAAGAC 2 cut(s) 46, 454
BsuRI GGCC 4 cut(s) 5, 253, 468, 474
Cac8I GCNNGC 1 cut(s) 356
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 251, 252
Csp6I GTAC 1 cut(s) 437
CviQI GTAC 1 cut(s) 437
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 48, 349, 370
Eco147I AGGCCT 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 255
EcoNI CCTNNNNNAGG 2 cut(s) 87, 348
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 208, 403
EcoT14I CCWWGG 3 cut(s) 48, 349, 370
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 3 cut(s) 48, 349, 370
FaiI YATR 5 cut(s) 12, 86, 200, 365, 431
FaqI GGGAC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 381, 538, 582, 585
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 4 cut(s) 381, 538, 582, 585
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 1 cut(s) 536
GluI GCNGC 4 cut(s) 381, 538, 582, 585
GsaI CCCAGC 2 cut(s) 252, 387
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 4 cut(s) 5, 253, 468, 474
HapII CCGG 1 cut(s) 559
HhaI GCGC 1 cut(s) 537
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 6 cut(s) 25, 261, 299, 415, 519, 545
HpaII CCGG 1 cut(s) 559
HphI GGTGA 2 cut(s) 104, 386
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 6 cut(s) 78, 192, 295, 414, 423, 550
Hpy188III TCNNGA 2 cut(s) 132, 258
Hpy8I GTNNAC 1 cut(s) 437
Hpy99I CGWCG 3 cut(s) 423, 444, 447
HpyAV CCTTC 3 cut(s) 83, 136, 583
HpyCH4V TGCA 3 cut(s) 35, 236, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 4 cut(s) 79, 337, 372, 502
Lsp1109I GCAGC 2 cut(s) 367, 549
LweI GCATC 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 303
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 46, 459
MhlI GDGCHC 1 cut(s) 255
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 34, 270
MmeI TCCRAC 2 cut(s) 101, 401
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 21, 203, 327
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 2 cut(s) 210, 405
MvaI CCWGG 2 cut(s) 210, 405
MwoI GCNNNNNNNGC 1 cut(s) 364
NdeII GATC 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 253, 339
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 303
NsbI TGCGCA 1 cut(s) 536
PasI CCCWGGG 1 cut(s) 404
PceI AGGCCT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 448, 466
PfeI GAWTC 4 cut(s) 299, 415, 519, 545
PkrI GCNGC 4 cut(s) 382, 539, 583, 586
PleI GAGTC 2 cut(s) 33, 269
PpsI GAGTC 2 cut(s) 33, 269
PshBI ATTAAT 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 208, 403
PspFI CCCAGC 2 cut(s) 248, 383
PspGI CCWGG 2 cut(s) 208, 403
PspN4I GGNNCC 2 cut(s) 253, 339
PspOMI GGGCCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 251, 252
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 21, 203, 327
SatI GCNGC 4 cut(s) 381, 538, 582, 585
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 2 cut(s) 251, 252
SchI GAGTC 2 cut(s) 34, 270
ScrFI CCNGG 2 cut(s) 210, 405
SduI GDGCHC 1 cut(s) 255
SetI ASST 7 cut(s) 67, 94, 154, 199, 360, 382, 556
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 84
SseBI AGGCCT 1 cut(s) 474
SsiI CCGC 3 cut(s) 500, 581, 584
SspI AATATT 1 cut(s) 19
StuI AGGCCT 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 208, 403
StyI CCWWGG 3 cut(s) 48, 349, 370
TaqI TCGA 1 cut(s) 133
TauI GCSGC 2 cut(s) 584, 587
TfiI GAWTC 4 cut(s) 299, 415, 519, 545
Tru1I TTAA 3 cut(s) 21, 203, 327
Tru9I TTAA 3 cut(s) 21, 203, 327
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 2 cut(s) 380, 537
Tsp45I GTSAC 1 cut(s) 303
VspI ATTAAT 1 cut(s) 327
XagI CCTNNNNNAGG 2 cut(s) 87, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.