Rorug03G0234500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000182
Physical Location & Seq
Reverse (-)
21679387 .. 21681236
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0234500.1

Sequence Viewer

Length: 495 bp
ATGCCGGCTGGACATGGTCTCCGATCACGAACCAGAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCACTCTCGACTTACCTCAAGACCTACCGGATCGGCGACTTCGTCGACGTCAAGGTCAATGGCGCCATCCACAAGGGTATGCCCCACAAGTTCTACCACGGCCGCACAGGTCGCGTCTGGAACGTCACCAAGAGAGCCATCGGAGTTGAGATCAACAAGCAGGTGGGTAACCGAATTATCAGGAAGAGGATCCATGTGCGTGTGGAGCATGTGCAGCCATCCAGGTGCACTGAAGAGTTCCGTTTGAGGAAGGTGAAGAACGATGAGCTGAAGGCAGAGGCCAAGTCTAAGGGTGAGGTCATCAGCACCAAGAGACAGCCAAAGGGTCCCAAGCCCGGTTTCATGGTTGAAGGTGCAGTTATGGAAACTGTTACTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGAGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.73

Weight (kDa)

10.44

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L21e PF01157 1 - 101 2.2e-45 Ribosomal protein L21e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
AasI GACNNNNNNGTC 1 cut(s) 128
AatII GACGTC 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 189
AciI CCGC 1 cut(s) 178
AclWI GGATC 3 cut(s) 113, 259, 272
AcoI YGGCCR 1 cut(s) 175
AcuI CTGAAG 3 cut(s) 40, 327, 365
AcyI GRCGYC 2 cut(s) 123, 138
AfiI CCNNNNNNNGG 1 cut(s) 410
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 1 cut(s) 296
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 23, 30, 382
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 3 cut(s) 113, 259, 272
AoxI GGCC 3 cut(s) 51, 175, 354
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 51, 401
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 3 cut(s) 193, 340, 380
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 305
BamHI GGATCC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 137
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 301
BccI CCATC 3 cut(s) 149, 221, 301
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 3 cut(s) 23, 30, 382
BfaI CTAG 2 cut(s) 48, 493
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 2 cut(s) 178, 290
BlsI GCNGC 2 cut(s) 179, 291
Bme1390I CCNGG 2 cut(s) 298, 411
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 51, 401
BmiI GGNNCC 4 cut(s) 139, 266, 402, 403
BmrFI CCNGG 2 cut(s) 298, 411
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 411
BsaHI GRCGYC 2 cut(s) 123, 138
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 3 cut(s) 33, 433, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 4
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 3 cut(s) 72, 141, 293
BseLI CCNNNNNNNGG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 305
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 2 cut(s) 308, 450
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 3 cut(s) 53, 177, 356
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 3 cut(s) 5, 103, 411
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 3 cut(s) 23, 30, 382
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 3 cut(s) 53, 177, 356
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 5 cut(s) 23, 105, 225, 264, 475
BspACI CCGC 1 cut(s) 178
BspANI GGCC 3 cut(s) 53, 177, 356
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 139, 266, 402, 403
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 3 cut(s) 113, 259, 272
BspT107I GGYRCC 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 5 cut(s) 23, 105, 225, 264, 475
BssNI GRCGYC 2 cut(s) 123, 138
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 254, 303
BstACI GRCGYC 2 cut(s) 123, 138
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 3 cut(s) 72, 141, 293
BstFNI CGCG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 5 cut(s) 26, 108, 228, 267, 478
BstMAI GTCTC 3 cut(s) 23, 30, 382
BstMBI GATC 5 cut(s) 23, 105, 225, 264, 475
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 186, 280, 289
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 296, 409
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 3 cut(s) 53, 177, 356
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 72, 141, 293
BtsIMutI CAGTG 1 cut(s) 303
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 51, 401
CseI GACGC 1 cut(s) 178
CviAII CATG 4 cut(s) 14, 269, 284, 418
CviJI RGCY 9 cut(s) 8, 53, 177, 212, 292, 343, 356, 394, 409
CviKI_1 RGCY 9 cut(s) 8, 53, 177, 212, 292, 343, 356, 394, 409
DdeI CTNAG 1 cut(s) 363
DinI GGCGCC 1 cut(s) 139
DpnI GATC 5 cut(s) 25, 107, 227, 266, 477
DpnII GATC 5 cut(s) 23, 105, 225, 264, 475
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 254, 303
EarI CTCTTC 2 cut(s) 254, 303
EclXI CGGCCG 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 401
Eco52I CGGCCG 1 cut(s) 175
Eco57I CTGAAG 3 cut(s) 40, 327, 365
Eco91I GGTNACC 1 cut(s) 242
EcoO109I RGGNCCY 2 cut(s) 51, 401
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 296
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
FaeI CATG 4 cut(s) 17, 272, 287, 421
FaiI YATR 7 cut(s) 15, 155, 270, 285, 419, 437, 462
FaqI GGGAC 1 cut(s) 387
FatI CATG 4 cut(s) 13, 268, 283, 417
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 2 cut(s) 178, 290
FokI GGATG 3 cut(s) 59, 128, 280
Fsp4HI GCNGC 2 cut(s) 178, 290
FspBI CTAG 2 cut(s) 48, 493
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 178, 290
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 53, 177, 356
HapII CCGG 3 cut(s) 5, 103, 411
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 2 cut(s) 123, 138
Hin1II CATG 4 cut(s) 17, 272, 287, 421
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HpaII CCGG 3 cut(s) 5, 103, 411
HphI GGTGA 3 cut(s) 193, 340, 380
Hpy166II GTNNAC 2 cut(s) 121, 303
Hpy188I TCNGA 2 cut(s) 23, 218
Hpy188III TCNNGA 6 cut(s) 27, 58, 82, 94, 193, 256
Hpy8I GTNNAC 2 cut(s) 121, 303
Hpy99I CGWCG 2 cut(s) 122, 125
HpyAV CCTTC 5 cut(s) 58, 64, 319, 340, 419
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 2 cut(s) 123, 198
HpyCH4V TGCA 3 cut(s) 289, 303, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 280, 289
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 123, 198
Hsp92I GRCGYC 2 cut(s) 123, 138
Hsp92II CATG 4 cut(s) 17, 272, 287, 421
HspAI GCGC 1 cut(s) 138
KasI GGCGCC 1 cut(s) 137
KflI GGGWCCC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 5 cut(s) 23, 105, 225, 264, 475
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 2 cut(s) 48, 493
MaeII ACGT 2 cut(s) 123, 198
MaeIII GTNAC 5 cut(s) 68, 199, 242, 445, 488
MalI GATC 5 cut(s) 25, 107, 227, 266, 477
MboI GATC 5 cut(s) 23, 105, 225, 264, 475
MboII GAAGA 4 cut(s) 73, 271, 320, 343
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 249
Mly113I GGCGCC 1 cut(s) 138
MnlI CCTC 6 cut(s) 101, 255, 315, 346, 364, 479
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 273, 298
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 3 cut(s) 5, 103, 411
MspR9I CCNGG 2 cut(s) 298, 411
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 186, 280, 289
NaeI GCCGGC 1 cut(s) 6
NarI GGCGCC 1 cut(s) 138
NciI CCSGG 1 cut(s) 411
NdeII GATC 5 cut(s) 23, 105, 225, 264, 475
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 17, 272, 287, 421
NlaIV GGNNCC 4 cut(s) 139, 266, 402, 403
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 287
PaqCI CACCTGC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 6
PflFI GACNNNGTC 2 cut(s) 15, 116
PkrI GCNGC 2 cut(s) 179, 291
PluTI GGCGCC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 296
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 4 cut(s) 139, 266, 402, 403
PspPI GGNCC 2 cut(s) 51, 401
PspPPI RGGWCCY 1 cut(s) 401
PsuI RGATCY 1 cut(s) 264
PsyI GACNNNGTC 2 cut(s) 15, 116
RseI CAYNNNNRTG 2 cut(s) 273, 298
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 2 cut(s) 178, 290
Sau3AI GATC 5 cut(s) 23, 105, 225, 264, 475
Sau96I GGNCC 2 cut(s) 51, 401
ScrFI CCNGG 2 cut(s) 298, 411
SduI GDGCHC 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 139
SgrDI CGTCGACG 1 cut(s) 119
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 273, 298
SmlI CTYRAG 2 cut(s) 92, 479
SmoI CTYRAG 2 cut(s) 92, 479
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 178
SspDI GGCGCC 1 cut(s) 137
SspMI CTAG 2 cut(s) 48, 493
StyD4I CCNGG 2 cut(s) 296, 409
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 2 cut(s) 126, 201
TaqI TCGA 2 cut(s) 83, 120
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 406
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 2 cut(s) 15, 116
Vha464I CTTAAG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 401
XceI RCATGY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 48, 493
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.