Rmu_ssc0000387.1_g000021

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000387.1
OG0000182
Physical Location & Seq
Forward (+)
111749 .. 112491
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000387.1_g000021.1.cds

Sequence Viewer

Length: 675 bp
atggccttcacttccaactctcaagctaaccttgctactagctcttttcgaccttttcccccaagacagtactttcctttcccacgttcctacaacgggaatgattctatccctgttgtcattggtgaaaccactatcaacattgataggtttgatgttcaagttgatatgccccctccacccatggagtttgatacccattactcccgtttctgtcttgttgggaagatttttgggcctctggtgccagctgacattgttttgagtaagtgtacggagctttggcaaaatctgaaagggaatatcaacatgagtcacctggccaacaattggtactgctttgagttcgataacaaagaggatgtttacttcatacttgacaacagaccgtggtatatcaggagcaggctctttcgagtccagcgatggaccccagactttgatgctaccacctccattattgattggattatcgtctgggccagacttcccaatcttcctttaccccactggaatgacaagtctttgaaacactggctgagcacctgggttgagctagatctgaggtacccccagaagcgaactattattatcaataatcccgatggtaagccctccagcatggttctggtttcgtatgcaggcccggacctgagattttcagacctgtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

224

Amino Acids

26.29

Weight (kDa)

6.41

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 567
AccB1I GGYRCC 2 cut(s) 244, 567
AccB7I CCANNNNNTGG 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 321
AfaI GTAC 4 cut(s) 71, 274, 335, 569
AfiI CCNNNNNNNGG 2 cut(s) 96, 330
AgsI TTSAA 2 cut(s) 161, 529
AjnI CCWGG 2 cut(s) 318, 545
AluBI AGCT 5 cut(s) 26, 42, 251, 280, 556
AluI AGCT 5 cut(s) 26, 42, 251, 280, 556
Alw21I GWGCWC 1 cut(s) 545
AoxI GGCC 5 cut(s) 3, 236, 321, 480, 643
Asp718I GGTACC 1 cut(s) 567
AspS9I GGNCC 5 cut(s) 236, 429, 480, 644, 649
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 2 cut(s) 137, 308
AvaII GGWCC 2 cut(s) 429, 649
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 2 cut(s) 244, 567
Bbv12I GWGCWC 1 cut(s) 545
BccI CCATC 2 cut(s) 420, 599
BciT130I CCWGG 2 cut(s) 320, 547
BcnI CCSGG 1 cut(s) 647
BfaI CTAG 2 cut(s) 39, 557
BglII AGATCT 1 cut(s) 559
BlpI GCTNAGC 1 cut(s) 539
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 320, 547, 647
Bme18I GGWCC 2 cut(s) 429, 649
BmgT120I GGNCC 5 cut(s) 236, 429, 480, 644, 649
BmiI GGNNCC 3 cut(s) 246, 431, 569
BmrFI CCNGG 3 cut(s) 320, 547, 647
BmsI GCATC 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 601
Bpu1102I GCTNAGC 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 183, 389, 546
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 330
Bse1I ACTGG 2 cut(s) 515, 539
BseBI CCWGG 2 cut(s) 320, 547
BseDI CCNNGG 3 cut(s) 183, 389, 546
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 96, 330
BseMII CTCAG 3 cut(s) 530, 554, 644
BseNI ACTGG 2 cut(s) 515, 539
BshFI GGCC 5 cut(s) 5, 238, 323, 482, 645
BshNI GGYRCC 2 cut(s) 244, 567
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 1 cut(s) 647
BslI CCNNNNNNNGG 2 cut(s) 96, 330
BsnI GGCC 5 cut(s) 5, 238, 323, 482, 645
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 1 cut(s) 559
Bsp1720I GCTNAGC 1 cut(s) 539
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 5 cut(s) 5, 238, 323, 482, 645
BspCNI CTCAG 3 cut(s) 531, 555, 645
BspLI GGNNCC 3 cut(s) 246, 431, 569
BspT107I GGYRCC 2 cut(s) 244, 567
BsrI ACTGG 2 cut(s) 515, 539
BssECI CCNNGG 3 cut(s) 183, 389, 546
BssMI GATC 1 cut(s) 559
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 320, 547
Bst4CI ACNGT 2 cut(s) 69, 390
BstC8I GCNNGC 3 cut(s) 249, 407, 643
BstDEI CTNAG 3 cut(s) 539, 563, 653
BstDSI CCRYGG 2 cut(s) 183, 389
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 1 cut(s) 562
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 2 cut(s) 32, 244
BstNI CCWGG 2 cut(s) 320, 547
BstSCI CCNGG 3 cut(s) 318, 545, 645
BstX2I RGATCY 1 cut(s) 559
BstYI RGATCY 1 cut(s) 559
BsuRI GGCC 5 cut(s) 5, 238, 323, 482, 645
BtgI CCRYGG 2 cut(s) 183, 389
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 2 cut(s) 508, 532
Cac8I GCNNGC 3 cut(s) 249, 407, 643
Cfr13I GGNCC 5 cut(s) 236, 429, 480, 644, 649
Csp6I GTAC 4 cut(s) 70, 273, 334, 568
CviAII CATG 3 cut(s) 184, 310, 622
CviQI GTAC 4 cut(s) 70, 273, 334, 568
DdeI CTNAG 3 cut(s) 539, 563, 653
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 429, 649
EcoRII CCWGG 2 cut(s) 318, 545
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 187, 313, 625
FaiI YATR 7 cut(s) 170, 185, 311, 374, 396, 623, 639
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 3 cut(s) 183, 309, 621
FokI GGATG 1 cut(s) 374
FspBI CTAG 2 cut(s) 39, 557
GsuI CTGGAG 1 cut(s) 601
HaeIII GGCC 5 cut(s) 5, 238, 323, 482, 645
HapII CCGG 1 cut(s) 647
Hin1II CATG 3 cut(s) 187, 313, 625
HinfI GANTC 3 cut(s) 104, 313, 417
HpaII CCGG 1 cut(s) 647
HphI GGTGA 2 cut(s) 137, 308
Hpy166II GTNNAC 2 cut(s) 273, 367
Hpy188I TCNGA 3 cut(s) 294, 564, 664
Hpy188III TCNNGA 2 cut(s) 400, 602
Hpy8I GTNNAC 2 cut(s) 273, 367
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 69, 390
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 244
HpyF3I CTNAG 3 cut(s) 539, 563, 653
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 3 cut(s) 187, 313, 625
KpnI GGTACC 1 cut(s) 571
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 2 cut(s) 277, 402
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 39, 557
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 2 cut(s) 238, 488
MfeI CAATTG 1 cut(s) 328
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 1 cut(s) 328
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 2 cut(s) 322, 426
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 6 cut(s) 186, 249, 352, 463, 558, 625
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 3 cut(s) 320, 547, 647
MunI CAATTG 1 cut(s) 328
MvaI CCWGG 2 cut(s) 320, 547
MwoI GCNNNNNNNGC 2 cut(s) 32, 244
NciI CCSGG 1 cut(s) 647
NcoI CCATGG 1 cut(s) 183
NdeII GATC 1 cut(s) 559
NlaIII CATG 3 cut(s) 187, 313, 625
NlaIV GGNNCC 3 cut(s) 246, 431, 569
NmuCI GTSAC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 421
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 330
PleI GAGTC 2 cut(s) 321, 425
PpsI GAGTC 2 cut(s) 321, 425
Psp6I CCWGG 2 cut(s) 318, 545
PspGI CCWGG 2 cut(s) 318, 545
PspN4I GGNNCC 3 cut(s) 246, 431, 569
PspPI GGNCC 5 cut(s) 236, 429, 480, 644, 649
PsuI RGATCY 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 4 cut(s) 71, 274, 335, 569
RsaNI GTAC 4 cut(s) 70, 273, 334, 568
RseI CAYNNNNRTG 1 cut(s) 513
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 5 cut(s) 236, 429, 480, 644, 649
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 2 cut(s) 322, 426
ScrFI CCNGG 3 cut(s) 320, 547, 647
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 1 cut(s) 433
SinI GGWCC 2 cut(s) 429, 649
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 1 cut(s) 328
SspMI CTAG 2 cut(s) 39, 557
StyD4I CCNGG 3 cut(s) 318, 545, 645
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 69, 390
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 49, 348, 415
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 2 cut(s) 515, 539
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 515, 539
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 429, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XspI CTAG 2 cut(s) 39, 557
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.