RLG00000003082

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000182
Physical Location & Seq
Forward (+)
44228321 .. 44233769
5449 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003082

Sequence Viewer

Length: 714 bp
ATGGCAGTTTTTCCTCAGCCCAATACCTTTGTTATTCGTCGTCAAGGCCCCACTGAATCCTTTGCTGAACAAGAAGGACAGGATGATATTAATCCATTATCTCTAAACTGGAGCCTTGTGACCAGGAAAAGGACTCCAGGTGCCAGGTCTTTTACTGGAAAACAGGGTAATGGTAGAGCCACTATTGGAACTAGATCCCTACCAACTCCAAACCGGAGTGGTTTAGTCAAAGATGGCCTCTCTTTCAAAGATGGTATCACTATTGGTAGCCCGCTTAGGACTATGAATAAGCTTGGAAATTCTGTTGCTGATCTTTCTCCTAACTCCCAGGACTTGGACAACTTTATGGATGCTAAAGAGGATGATGAAAATGCTTTCATTAATAATCTAATTGCTCCTAAAAATTCTGCCGTGGAGGCTTGGAACAACGACAACCTGGAAGATCACATGAAGTTAGCTTTGATCTCAGACTATCTAAGACTCTCAGAGACTTCCGACGTCGACTACTGTGGTAAACCATCACGCACTGGAGCAGAGGAGCAGCGGAGCTCGTCGTCGGGGACGTTGGAGCCCAGAGCCTTGAGGACATTGCCAAGCTCCGAGGTTGAGATCTTGCAGTCGCCGTTGGAGTCAAAGCTCTTGAAGACGCGGTGGACCTCGTCGAGTCGTCAGTCACGACGTGTTTGGACTTTGGAGTCGGCGACTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.04

Weight (kDa)

5.99

Isoelectric Point (pI)

61.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 694
AatII GACGTC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 649
AciI CCGC 3 cut(s) 272, 544, 649
AclWI GGATC 1 cut(s) 189
AcsI RAATTY 2 cut(s) 298, 403
AcyI GRCGYC 1 cut(s) 498
AdeI CACNNNGTG 1 cut(s) 680
AfiI CCNNNNNNNGG 2 cut(s) 129, 334
AflIII ACRYGT 1 cut(s) 679
AgsI TTSAA 2 cut(s) 247, 643
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 5 cut(s) 122, 136, 143, 327, 435
AluBI AGCT 5 cut(s) 292, 458, 549, 597, 637
AluI AGCT 5 cut(s) 292, 458, 549, 597, 637
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 1 cut(s) 189
AoxI GGCC 2 cut(s) 46, 235
ApeKI GCWGC 1 cut(s) 541
ApoI RAATTY 2 cut(s) 298, 403
AseI ATTAAT 2 cut(s) 90, 381
AspS9I GGNCC 2 cut(s) 47, 654
AvaII GGWCC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 551, 573
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 551
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 227, 245, 526
BceAI ACGGC 2 cut(s) 395, 607
BciT130I CCWGG 5 cut(s) 124, 138, 145, 329, 437
BcoDI GTCTC 1 cut(s) 482
BfaI CTAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 609
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
Bme1390I CCNGG 5 cut(s) 124, 138, 145, 329, 437
Bme18I GGWCC 1 cut(s) 654
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 47, 654
BmiI GGNNCC 4 cut(s) 49, 113, 142, 570
BmrFI CCNGG 5 cut(s) 124, 138, 145, 329, 437
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 3 cut(s) 120, 130, 549
Bpu10I CCTNAGC 2 cut(s) 15, 275
BpuEI CTTGAG 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 327, 411, 600
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 334
Bse1I ACTGG 4 cut(s) 113, 160, 532, 709
Bse3DI GCAATG 1 cut(s) 587
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 5 cut(s) 124, 138, 145, 329, 437
BseDI CCNNGG 3 cut(s) 327, 411, 600
BseGI GGATG 3 cut(s) 88, 355, 367
BseJI GATNNNNATC 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 129, 334
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 3 cut(s) 29, 480, 498
BseNI ACTGG 4 cut(s) 113, 160, 532, 709
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 2 cut(s) 48, 237
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 551
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 2 cut(s) 129, 334
BsmAI GTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 2 cut(s) 48, 237
Bsp1286I GDGCHC 2 cut(s) 551, 573
Bsp143I GATC 5 cut(s) 194, 310, 442, 462, 609
BspACI CCGC 3 cut(s) 272, 544, 649
BspANI GGCC 2 cut(s) 48, 237
BspCNI CTCAG 3 cut(s) 28, 479, 497
BspFNI CGCG 1 cut(s) 649
BspLI GGNNCC 4 cut(s) 49, 113, 142, 570
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 587
BsrI ACTGG 4 cut(s) 113, 160, 532, 709
BssECI CCNNGG 3 cut(s) 327, 411, 600
BssMI GATC 5 cut(s) 194, 310, 442, 462, 609
BssNI GRCGYC 1 cut(s) 498
Bst2UI CCWGG 5 cut(s) 124, 138, 145, 329, 437
Bst4CI ACNGT 1 cut(s) 509
BstACI GRCGYC 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 5 cut(s) 15, 275, 466, 476, 484
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 3 cut(s) 88, 355, 367
BstFNI CGCG 1 cut(s) 649
BstKTI GATC 5 cut(s) 197, 313, 445, 465, 612
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 5 cut(s) 194, 310, 442, 462, 609
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 5 cut(s) 124, 138, 145, 329, 437
BstSCI CCNGG 5 cut(s) 122, 136, 143, 327, 435
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 2 cut(s) 194, 609
BstYI RGATCY 2 cut(s) 194, 609
BsuRI GGCC 2 cut(s) 48, 237
BtgI CCRYGG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 3 cut(s) 88, 355, 367
BtsIMutI CAGTG 2 cut(s) 51, 525
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 47, 654
CseI GACGC 1 cut(s) 655
CviAII CATG 1 cut(s) 448
DdeI CTNAG 5 cut(s) 15, 275, 466, 476, 484
DpnI GATC 5 cut(s) 196, 312, 444, 464, 611
DpnII GATC 5 cut(s) 194, 310, 442, 462, 609
DraIII CACNNNGTG 1 cut(s) 680
DrdI GACNNNNNNGTC 1 cut(s) 694
DseDI GACNNNNNNGTC 1 cut(s) 694
Ecl136II GAGCTC 1 cut(s) 549
Eco24I GRGCYC 2 cut(s) 551, 573
Eco47I GGWCC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 549
EcoICRI GAGCTC 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 5 cut(s) 122, 136, 143, 327, 435
EcoT38I GRGCYC 2 cut(s) 551, 573
FaeI CATG 1 cut(s) 451
FaiI YATR 3 cut(s) 284, 347, 449
FaqI GGGAC 1 cut(s) 574
FatI CATG 1 cut(s) 447
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 542
FokI GGATG 3 cut(s) 95, 362, 374
FriOI GRGCYC 2 cut(s) 551, 573
Fsp4HI GCNGC 1 cut(s) 542
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 542
GsuI CTGGAG 3 cut(s) 120, 130, 549
HaeIII GGCC 2 cut(s) 48, 237
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 655
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 451
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 6 cut(s) 56, 133, 480, 629, 664, 695
HpaII CCGG 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 502, 515, 654
Hpy188I TCNGA 4 cut(s) 469, 487, 496, 601
Hpy188III TCNNGA 2 cut(s) 640, 675
Hpy8I GTNNAC 3 cut(s) 502, 515, 654
Hpy99I CGWCG 7 cut(s) 42, 500, 503, 556, 559, 664, 681
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4IV ACGT 3 cut(s) 498, 563, 679
HpyCH4V TGCA 1 cut(s) 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 5 cut(s) 15, 275, 466, 476, 484
HpySE526I ACGT 3 cut(s) 498, 563, 679
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 451
Kzo9I GATC 5 cut(s) 194, 310, 442, 462, 609
LmnI GCTCC 7 cut(s) 111, 400, 530, 538, 546, 568, 602
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 192
MaeII ACGT 3 cut(s) 498, 563, 679
MaeIII GTNAC 2 cut(s) 118, 672
MalI GATC 5 cut(s) 196, 312, 444, 464, 611
MboI GATC 5 cut(s) 194, 310, 442, 462, 609
MboII GAAGA 2 cut(s) 452, 655
MflI RGATCY 2 cut(s) 194, 609
MhlI GDGCHC 2 cut(s) 551, 573
MluCI AATT 3 cut(s) 298, 390, 403
MlyI GAGTC 5 cut(s) 127, 474, 638, 673, 704
MmeI TCCRAC 3 cut(s) 519, 546, 606
MnlI CCTC 8 cut(s) 24, 248, 352, 409, 529, 576, 595, 667
MseI TTAA 3 cut(s) 90, 381, 712
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 5 cut(s) 124, 138, 145, 329, 437
MvaI CCWGG 5 cut(s) 124, 138, 145, 329, 437
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 5 cut(s) 194, 310, 442, 462, 609
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 4 cut(s) 49, 113, 142, 570
NmuCI GTSAC 2 cut(s) 118, 672
PcsI WCGNNNNNNNCGW 2 cut(s) 560, 673
PfeI GAWTC 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 658
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 1 cut(s) 543
PleI GAGTC 5 cut(s) 127, 474, 637, 672, 703
PpsI GAGTC 5 cut(s) 127, 474, 637, 672, 703
PshBI ATTAAT 2 cut(s) 90, 381
Psp124BI GAGCTC 1 cut(s) 551
Psp6I CCWGG 5 cut(s) 122, 136, 143, 327, 435
PspGI CCWGG 5 cut(s) 122, 136, 143, 327, 435
PspN4I GGNNCC 4 cut(s) 49, 113, 142, 570
PspPI GGNCC 2 cut(s) 47, 654
PsuI RGATCY 2 cut(s) 194, 609
PsyI GACNNNGTC 1 cut(s) 658
SacI GAGCTC 1 cut(s) 551
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 3 cut(s) 90, 381, 712
SatI GCNGC 1 cut(s) 542
Sau3AI GATC 5 cut(s) 194, 310, 442, 462, 609
Sau96I GGNCC 2 cut(s) 47, 654
SchI GAGTC 5 cut(s) 127, 474, 638, 673, 704
ScrFI CCNGG 5 cut(s) 124, 138, 145, 329, 437
SduI GDGCHC 2 cut(s) 551, 573
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 580
SmoI CTYRAG 1 cut(s) 580
Sse9I AATT 3 cut(s) 298, 390, 403
SsiI CCGC 3 cut(s) 272, 544, 649
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 551
StyD4I CCNGG 5 cut(s) 122, 136, 143, 327, 435
TaaI ACNGT 1 cut(s) 509
TaiI ACGT 3 cut(s) 501, 566, 682
TaqI TCGA 2 cut(s) 501, 662
TasI AATT 3 cut(s) 298, 390, 403
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 90, 381, 712
Tru9I TTAA 3 cut(s) 90, 381, 712
TscAI CASTG 2 cut(s) 58, 532
TseFI GTSAC 2 cut(s) 118, 672
TseI GCWGC 1 cut(s) 541
Tsp45I GTSAC 2 cut(s) 118, 672
TspDTI ATGAA 4 cut(s) 299, 367, 381, 464
TspRI CASTG 2 cut(s) 58, 532
Tth111I GACNNNGTC 1 cut(s) 658
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 654
VspI ATTAAT 2 cut(s) 90, 381
XapI RAATTY 2 cut(s) 298, 403
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 1 cut(s) 192
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.