Prupe.2G036800_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000182
Physical Location & Seq
Reverse (-)
3983876 .. 3985475
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G036800.1

Sequence Viewer

Length: 924 bp
ATGAAACCAAAGTCTCCACCTCTGCTCTTGCGTCTAGTGTCCAAACTCAATGAGACTTTCTGCTTGGTAGGGAAAGTCTTTGGAGTTCCTGTGAATAGCAGAGTTATCAGGCATAGGCTCAAGAGTGAGTGGAAGAACCTGCAGGGTGAGGTCTCTATTGACCATATTGGTCGAGACTGGTATAAGGTGGAGTTCAATGCTGAAGTTGATGTTTTTTTCGTTTTGGATAACAGACCCTGGTTTGTCCAAGGTCAGATTTTTAACCTGCAGCGCTGGACCCCAGATTTCTCACCCTTTTATGCTGTTGTGACATCCATTGTGGGCTGGGTCAGAATTCCCTTTCTGCCCCTCCATTACAAAGACCCTGAGGTTCTCTATGATTTGGTCTCTATCCTTGGAGATCCTATTAGTGTGGACCTGCAGTCTACAGAGGGTAAACAGATTATGTTTGTTAGAGCTCACCTTGTGTTAGACCTAACTAGGCCCCTAAAAAGATGCCTAGTTCTGGGTGAGCATCCCCAGGAAACCATAATATTTGTTAGCTATGAAGCCCTTTTTGCGATCTGTTTCTATTGTAGCCAGAAGATGGAGCGCGATCACATTTGCCCTATCAAAATTTCAAACAAAAGCTTTCTGATGGCTTTTCCCAGCAAGGGGAAGGGTAGGGCTGTTGTGATTGCCCCTGCTCATTCCCAAGAAGGCAGCAGTGCCTTCACTGGTTTCGCTTACAAGAGTCCTAAGAAGAGAACTCGTGATGAGGTGGAAGTGGAAGAGAATTATGCTCCAAGTGTTGAGATGCATGGAGAGTATCTGAGGGAGACTGAACCCTTGGTTGATTCCCATGAGCGTTTCATTCACTGCCACATTCAAGATCTTATTGACCAAAAAAATTGGAAAGCTACTTTTGTCTATGCTTATCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

308

Amino Acids

35.5

Weight (kDa)

7.67

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 147, 273, 426
AccB7I CCANNNNNTGG 1 cut(s) 586
AccI GTMKAC 1 cut(s) 425
AccII CGCG 1 cut(s) 594
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 2 cut(s) 333, 615
AcuI CTGAAG 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 466
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 505, 586, 653, 654
AgsI TTSAA 3 cut(s) 196, 621, 869
AhdI GACNNNNNGTC 1 cut(s) 421
AjnI CCWGG 2 cut(s) 236, 519
AluBI AGCT 4 cut(s) 458, 543, 630, 899
AluI AGCT 4 cut(s) 458, 543, 630, 899
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 6 cut(s) 18, 47, 157, 168, 391, 812
AlwI GGATC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 237
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 268, 702
ApoI RAATTY 2 cut(s) 333, 615
AspLEI GCGC 2 cut(s) 273, 594
AspS9I GGNCC 3 cut(s) 276, 415, 483
AsuHPI GGTGA 4 cut(s) 158, 282, 452, 521
AvaII GGWCC 2 cut(s) 276, 415
AxyI CCTNAGG 1 cut(s) 366
BanII GRGCYC 1 cut(s) 460
BauI CACGAG 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 280, 714
BccI CCATC 2 cut(s) 580, 631
BciT130I CCWGG 2 cut(s) 238, 521
BcoDI GTCTC 6 cut(s) 18, 47, 157, 168, 391, 812
BfaI CTAG 4 cut(s) 35, 480, 500, 922
BfmI CTRYAG 4 cut(s) 140, 266, 419, 426
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 3 cut(s) 147, 273, 426
BglII AGATCT 1 cut(s) 871
BisI GCNGC 2 cut(s) 269, 703
BlsI GCNGC 2 cut(s) 270, 704
Bme1390I CCNGG 2 cut(s) 238, 521
Bme18I GGWCC 2 cut(s) 276, 415
BmeRI GACNNNNNGTC 1 cut(s) 421
BmgT120I GGNCC 3 cut(s) 276, 415, 483
BmiI GGNNCC 2 cut(s) 278, 485
BmrFI CCNGG 2 cut(s) 238, 521
BmsI GCATC 3 cut(s) 485, 523, 786
BpuEI CTTGAG 1 cut(s) 104
BsaI GGTCTC 2 cut(s) 157, 391
BsaJI CCNNGG 5 cut(s) 236, 247, 394, 519, 828
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 4 cut(s) 505, 586, 653, 654
Bse1I ACTGG 2 cut(s) 182, 721
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 2 cut(s) 238, 521
BseDI CCNNGG 5 cut(s) 236, 247, 394, 519, 828
BseGI GGATG 2 cut(s) 311, 514
BseLI CCNNNNNNNGG 4 cut(s) 505, 586, 653, 654
BseMII CTCAG 2 cut(s) 357, 803
BseNI ACTGG 2 cut(s) 182, 721
BseXI GCAGC 2 cut(s) 280, 714
BseYI CCCAGC 2 cut(s) 324, 647
Bsh1236I CGCG 1 cut(s) 594
BshFI GGCC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 460
BslI CCNNNNNNNGG 4 cut(s) 505, 586, 653, 654
BsmAI GTCTC 6 cut(s) 18, 47, 157, 168, 391, 812
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 2 cut(s) 157, 391
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 400, 561, 595, 871
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 2 cut(s) 358, 804
BspFNI CGCG 1 cut(s) 594
BspLI GGNNCC 2 cut(s) 278, 485
BspMAI CTGCAG 3 cut(s) 144, 270, 423
BspMI ACCTGC 3 cut(s) 147, 273, 426
BspPI GGATC 1 cut(s) 395
BspTNI GGTCTC 2 cut(s) 157, 391
BsrI ACTGG 2 cut(s) 182, 721
BssECI CCNNGG 5 cut(s) 236, 247, 394, 519, 828
BssMI GATC 4 cut(s) 400, 561, 595, 871
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 3 cut(s) 247, 394, 828
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 238, 521
Bst6I CTCTTC 2 cut(s) 737, 765
BstDEI CTNAG 3 cut(s) 366, 738, 812
BstF5I GGATG 2 cut(s) 311, 514
BstFNI CGCG 1 cut(s) 594
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 273, 594
BstKTI GATC 4 cut(s) 403, 564, 598, 874
BstMAI GTCTC 6 cut(s) 18, 47, 157, 168, 391, 812
BstMBI GATC 4 cut(s) 400, 561, 595, 871
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 2 cut(s) 238, 521
BstSCI CCNGG 2 cut(s) 236, 519
BstSFI CTRYAG 4 cut(s) 140, 266, 419, 426
BstUI CGCG 1 cut(s) 594
BstV1I GCAGC 2 cut(s) 280, 714
BstX2I RGATCY 2 cut(s) 400, 871
BstYI RGATCY 2 cut(s) 400, 871
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 484
BtsCI GGATG 2 cut(s) 311, 514
BtsI GCAGTG 2 cut(s) 712, 856
BtsIMutI CAGTG 3 cut(s) 712, 714, 856
BveI ACCTGC 3 cut(s) 147, 273, 426
CaiI CAGNNNCTG 1 cut(s) 237
CfoI GCGC 2 cut(s) 273, 594
Cfr13I GGNCC 3 cut(s) 276, 415, 483
CseI GACGC 1 cut(s) 20
CviAII CATG 2 cut(s) 800, 842
DdeI CTNAG 3 cut(s) 366, 738, 812
DpnI GATC 4 cut(s) 402, 563, 597, 873
DpnII GATC 4 cut(s) 400, 561, 595, 871
DraIII CACNNNGTG 1 cut(s) 466
DriI GACNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 737, 765
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 2 cut(s) 737, 765
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 3 cut(s) 247, 394, 828
Eco24I GRGCYC 1 cut(s) 460
Eco31I GGTCTC 2 cut(s) 157, 391
Eco47I GGWCC 2 cut(s) 276, 415
Eco47III AGCGCT 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 458
Eco57I CTGAAG 1 cut(s) 222
Eco81I CCTNAGG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 236, 519
EcoT14I CCWWGG 3 cut(s) 247, 394, 828
EcoT22I ATGCAT 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 460
ErhI CCWWGG 3 cut(s) 247, 394, 828
FaeI CATG 2 cut(s) 803, 845
FatI CATG 2 cut(s) 799, 841
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 2 cut(s) 269, 703
FokI GGATG 2 cut(s) 298, 501
FriOI GRGCYC 1 cut(s) 460
Fsp4HI GCNGC 2 cut(s) 269, 703
FspBI CTAG 4 cut(s) 35, 480, 500, 922
GlaI GCGC 2 cut(s) 272, 593
GluI GCNGC 2 cut(s) 269, 703
GsaI CCCAGC 2 cut(s) 328, 651
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 1 cut(s) 484
HgaI GACGC 1 cut(s) 20
HhaI GCGC 2 cut(s) 273, 594
Hin1II CATG 2 cut(s) 803, 845
Hin6I GCGC 2 cut(s) 271, 592
HinP1I GCGC 2 cut(s) 271, 592
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 2 cut(s) 733, 836
HphI GGTGA 4 cut(s) 158, 282, 452, 521
Hpy166II GTNNAC 3 cut(s) 415, 426, 437
Hpy188I TCNGA 4 cut(s) 255, 332, 636, 813
Hpy188III TCNNGA 4 cut(s) 121, 173, 752, 869
Hpy8I GTNNAC 3 cut(s) 415, 426, 437
HpyAV CCTTC 3 cut(s) 652, 692, 721
HpyCH4V TGCA 4 cut(s) 142, 268, 421, 799
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 3 cut(s) 366, 738, 812
Hsp92II CATG 2 cut(s) 803, 845
HspAI GCGC 2 cut(s) 271, 592
Kzo9I GATC 4 cut(s) 400, 561, 595, 871
LmnI GCTCC 2 cut(s) 589, 787
Lsp1109I GCAGC 2 cut(s) 280, 714
LweI GCATC 3 cut(s) 485, 523, 786
MaeI CTAG 4 cut(s) 35, 480, 500, 922
MaeIII GTNAC 1 cut(s) 307
MalI GATC 4 cut(s) 402, 563, 597, 873
MboI GATC 4 cut(s) 400, 561, 595, 871
MboII GAAGA 4 cut(s) 145, 595, 754, 782
MflI RGATCY 2 cut(s) 400, 871
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 4 cut(s) 333, 615, 775, 889
MlyI GAGTC 1 cut(s) 742
MnlI CCTC 7 cut(s) 30, 142, 359, 361, 424, 751, 807
Mph1103I ATGCAT 1 cut(s) 801
MseI TTAA 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 238, 521
MvaI CCWGG 2 cut(s) 238, 521
MvnI CGCG 1 cut(s) 594
MwoI GCNNNNNNNGC 1 cut(s) 557
NdeII GATC 4 cut(s) 400, 561, 595, 871
NlaIII CATG 2 cut(s) 803, 845
NlaIV GGNNCC 2 cut(s) 278, 485
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 801
PfeI GAWTC 1 cut(s) 836
PflMI CCANNNNNTGG 1 cut(s) 586
PkrI GCNGC 2 cut(s) 270, 704
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 236, 519
PspFI CCCAGC 2 cut(s) 324, 647
PspGI CCWGG 2 cut(s) 236, 519
PspN4I GGNNCC 2 cut(s) 278, 485
PspPI GGNCC 3 cut(s) 276, 415, 483
PstI CTGCAG 3 cut(s) 144, 270, 423
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 2 cut(s) 400, 871
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 269, 703
Sau3AI GATC 4 cut(s) 400, 561, 595, 871
Sau96I GGNCC 3 cut(s) 276, 415, 483
SbfI CCTGCAGG 1 cut(s) 144
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 2 cut(s) 238, 521
SdaI CCTGCAGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 3 cut(s) 485, 523, 786
SfcI CTRYAG 4 cut(s) 140, 266, 419, 426
SinI GGWCC 2 cut(s) 276, 415
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse8387I CCTGCAGG 1 cut(s) 144
Sse9I AATT 4 cut(s) 333, 615, 775, 889
SspI AATATT 1 cut(s) 534
SspMI CTAG 4 cut(s) 35, 480, 500, 922
SstI GAGCTC 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 236, 519
StyI CCWWGG 3 cut(s) 247, 394, 828
TaqI TCGA 1 cut(s) 172
TasI AATT 4 cut(s) 333, 615, 775, 889
TfiI GAWTC 1 cut(s) 836
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 3 cut(s) 712, 721, 863
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 268, 702
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 3 cut(s) 17, 561, 841
TspRI CASTG 3 cut(s) 712, 721, 863
Van91I CCANNNNNTGG 1 cut(s) 586
VpaK11BI GGWCC 2 cut(s) 276, 415
XapI RAATTY 2 cut(s) 333, 615
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 4 cut(s) 35, 480, 500, 922
Zsp2I ATGCAT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.