Rh1AG087000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000182
Physical Location & Seq
Forward (+)
14868680 .. 14875800
7121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG087000.1

Sequence Viewer

Length: 729 bp
ATGGCCTTCACTTCCAACTCTCAAGCTAACCTTGCTACTAGCTCTTTTCGACCTTTTCCCCCAAGACAGTACTTTCCTTTCCCTCATACCTATAACGGGAATGAATCTATCCCTGTTGTCATTGGTGAAACCAATATCAACATTGATAGGTTTGTTGTTCAAGTTGATATGCCCCCTCCACCCATGGAATTCGATACCCATTACTCTCGTTTCTGTCTTGTTGGGAAGATTTTCGGGCCTCTGGTGCCAGCTGACATTGTATTGAGCAAATGTATGGAGCTTTGGCAAAATTTGAAAGGGAATATCAACATGAGTCGCCTGGCCAACAATTGGTACTGCTTTGAGTTAGAAAACGAGGAAGATGTTTACTTCATACTCGACAACAGACCTTGGTATATCAGGAGCAGGCTCTTTCGAGTCCAGCGGTGGACCCCGGACTTTGATGCTACCACCTCCATTATTGATCGGATTATTGTCTGGGCCAGACTTCCTAATCTTCCTTTACCCCACTGGAATGATAAGTCTTTGAAACACCTGGCTGAGCACCTGGGTAATTATATCAAGGCAGATGAGCATACCCTAACGGGAAAGAAGACTATGTTTGCTCATTTTCGAGTTGAGCTAGATCTGAGGTACCCCCTGAAGAGAACTGTTATTATCAATAACCTCGATGCAATTGGGAGAAAAACACTTGGTGAAACCGTGAAGGCCTCGATTACCAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

242

Amino Acids

28.16

Weight (kDa)

8.4

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 71 - 150 1.2e-13 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 633
AccB1I GGYRCC 2 cut(s) 244, 633
AccB7I CCANNNNNTGG 1 cut(s) 330
AciI CCGC 1 cut(s) 424
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 2 cut(s) 188, 289
AcuI CTGAAG 1 cut(s) 662
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 3 cut(s) 71, 335, 635
AfiI CCNNNNNNNGG 2 cut(s) 96, 330
AgsI TTSAA 3 cut(s) 161, 295, 529
AjnI CCWGG 3 cut(s) 318, 534, 546
AluBI AGCT 5 cut(s) 26, 42, 251, 280, 622
AluI AGCT 5 cut(s) 26, 42, 251, 280, 622
Alw21I GWGCWC 1 cut(s) 546
AoxI GGCC 5 cut(s) 3, 236, 321, 480, 708
ApoI RAATTY 2 cut(s) 188, 289
Asp700I GAANNNNTTC 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 633
AspS9I GGNCC 3 cut(s) 236, 429, 480
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 2 cut(s) 137, 707
AvaII GGWCC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 2 cut(s) 244, 633
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 546
BciT130I CCWGG 3 cut(s) 320, 536, 548
BcnI CCSGG 1 cut(s) 434
BfaI CTAG 2 cut(s) 39, 623
BglII AGATCT 1 cut(s) 625
BlpI GCTNAGC 1 cut(s) 540
BmcAI AGTACT 1 cut(s) 71
Bme1390I CCNGG 4 cut(s) 320, 434, 536, 548
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 3 cut(s) 236, 429, 480
BmiI GGNNCC 3 cut(s) 246, 431, 635
BmrFI CCNGG 4 cut(s) 320, 434, 536, 548
BmsI GCATC 2 cut(s) 433, 661
BpiI GAAGAC 1 cut(s) 599
Bpu1102I GCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 183, 389, 432, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 330
Bse1I ACTGG 1 cut(s) 515
BseBI CCWGG 3 cut(s) 320, 536, 548
BseDI CCNNGG 4 cut(s) 183, 389, 432, 547
BseLI CCNNNNNNNGG 2 cut(s) 96, 330
BseMII CTCAG 2 cut(s) 531, 620
BseNI ACTGG 1 cut(s) 515
BshFI GGCC 5 cut(s) 5, 238, 323, 482, 710
BshNI GGYRCC 2 cut(s) 244, 633
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 96, 330
BsnI GGCC 5 cut(s) 5, 238, 323, 482, 710
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 2 cut(s) 463, 625
Bsp1720I GCTNAGC 1 cut(s) 540
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 1 cut(s) 424
BspANI GGCC 5 cut(s) 5, 238, 323, 482, 710
BspCNI CTCAG 2 cut(s) 532, 621
BspLI GGNNCC 3 cut(s) 246, 431, 635
BspT107I GGYRCC 2 cut(s) 244, 633
BsrI ACTGG 1 cut(s) 515
BssECI CCNNGG 4 cut(s) 183, 389, 432, 547
BssMI GATC 2 cut(s) 463, 625
BssT1I CCWWGG 2 cut(s) 183, 389
Bst2UI CCWGG 3 cut(s) 320, 536, 548
Bst4CI ACNGT 3 cut(s) 69, 652, 703
Bst6I CTCTTC 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 249, 407
BstDEI CTNAG 2 cut(s) 540, 629
BstDSI CCRYGG 1 cut(s) 183
BstKTI GATC 2 cut(s) 466, 628
BstMBI GATC 2 cut(s) 463, 625
BstMWI GCNNNNNNNGC 2 cut(s) 32, 244
BstNI CCWGG 3 cut(s) 320, 536, 548
BstSCI CCNGG 4 cut(s) 318, 432, 534, 546
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 5 cut(s) 5, 238, 323, 482, 710
BtgI CCRYGG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 249, 407
Cfr13I GGNCC 3 cut(s) 236, 429, 480
Csp6I GTAC 3 cut(s) 70, 334, 634
CviAII CATG 2 cut(s) 184, 310
CviQI GTAC 3 cut(s) 70, 334, 634
DdeI CTNAG 2 cut(s) 540, 629
DpnI GATC 2 cut(s) 465, 627
DpnII GATC 2 cut(s) 463, 625
DraIII CACNNNGTG 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Eco130I CCWWGG 2 cut(s) 183, 389
Eco147I AGGCCT 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 662
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 3 cut(s) 318, 534, 546
EcoT14I CCWWGG 2 cut(s) 183, 389
ErhI CCWWGG 2 cut(s) 183, 389
FaeI CATG 2 cut(s) 187, 313
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FatI CATG 2 cut(s) 183, 309
FspBI CTAG 2 cut(s) 39, 623
HaeIII GGCC 5 cut(s) 5, 238, 323, 482, 710
HapII CCGG 1 cut(s) 434
Hin1II CATG 2 cut(s) 187, 313
HinfI GANTC 3 cut(s) 104, 313, 417
HpaII CCGG 1 cut(s) 434
HphI GGTGA 2 cut(s) 137, 707
Hpy166II GTNNAC 2 cut(s) 367, 429
Hpy188I TCNGA 2 cut(s) 468, 630
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 2 cut(s) 367, 429
HpyAV CCTTC 2 cut(s) 16, 700
HpyCH4III ACNGT 3 cut(s) 69, 652, 703
HpyCH4V TGCA 1 cut(s) 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 244
HpyF3I CTNAG 2 cut(s) 540, 629
Hsp92II CATG 2 cut(s) 187, 313
KpnI GGTACC 1 cut(s) 637
Kzo9I GATC 2 cut(s) 463, 625
LmnI GCTCC 2 cut(s) 277, 402
LweI GCATC 2 cut(s) 433, 661
MaeI CTAG 2 cut(s) 39, 623
MalI GATC 2 cut(s) 465, 627
MboI GATC 2 cut(s) 463, 625
MboII GAAGA 5 cut(s) 238, 371, 488, 604, 655
MfeI CAATTG 2 cut(s) 328, 675
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 546
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 5 cut(s) 188, 289, 328, 553, 675
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 2 cut(s) 322, 426
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 8 cut(s) 93, 186, 249, 349, 463, 624, 677, 721
Mox20I TGGCCA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 230
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 251, 424
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 4 cut(s) 320, 434, 536, 548
MunI CAATTG 2 cut(s) 328, 675
MvaI CCWGG 3 cut(s) 320, 536, 548
MwoI GCNNNNNNNGC 2 cut(s) 32, 244
NciI CCSGG 1 cut(s) 434
NcoI CCATGG 1 cut(s) 183
NdeII GATC 2 cut(s) 463, 625
NlaIII CATG 2 cut(s) 187, 313
NlaIV GGNNCC 3 cut(s) 246, 431, 635
PceI AGGCCT 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 330
PleI GAGTC 2 cut(s) 321, 425
PpsI GAGTC 2 cut(s) 321, 425
Psp6I CCWGG 3 cut(s) 318, 534, 546
PspGI CCWGG 3 cut(s) 318, 534, 546
PspN4I GGNNCC 3 cut(s) 246, 431, 635
PspPI GGNCC 3 cut(s) 236, 429, 480
PsuI RGATCY 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 3 cut(s) 71, 335, 635
RsaNI GTAC 3 cut(s) 70, 334, 634
RseI CAYNNNNRTG 1 cut(s) 513
Sau3AI GATC 2 cut(s) 463, 625
Sau96I GGNCC 3 cut(s) 236, 429, 480
ScaI AGTACT 1 cut(s) 71
SchI GAGTC 2 cut(s) 322, 426
ScrFI CCNGG 4 cut(s) 320, 434, 536, 548
SduI GDGCHC 1 cut(s) 546
SfaNI GCATC 2 cut(s) 433, 661
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
Sse9I AATT 5 cut(s) 188, 289, 328, 553, 675
SseBI AGGCCT 1 cut(s) 710
SsiI CCGC 1 cut(s) 424
SspMI CTAG 2 cut(s) 39, 623
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 4 cut(s) 318, 432, 534, 546
StyI CCWWGG 2 cut(s) 183, 389
TaaI ACNGT 3 cut(s) 69, 652, 703
TaqI TCGA 7 cut(s) 49, 192, 378, 415, 613, 669, 713
TasI AATT 5 cut(s) 188, 289, 328, 553, 675
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 117, 361
TspRI CASTG 1 cut(s) 515
Van91I CCANNNNNTGG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 429
XapI RAATTY 2 cut(s) 188, 289
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 2 cut(s) 39, 623
ZrmI AGTACT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.