Rh5BG367100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000182
Physical Location & Seq
Reverse (-)
57556853 .. 57558838
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG367100.1

Sequence Viewer

Length: 1986 bp
ATGGAAACTTGGCTTTGGGAACACGCCCCACGCGCCCCCTTTTCTGGGGATTTAGGGTTTCCAATTTCGATTCTTTCCTTCGTAATCACCCTTGTTAGCTGGTTTTTCTGGACAAGCACGTGGAGGGACTTATGGCCGGGAATCAGTTTCTCATCCTCCCAGGCAAAGGATGACTCCAGTATACGTTGCAATTGCAGATATGGGCAATACCTAGAGCACGAGGGCGGCGCAAATCATAACCTCTATTCCAAGAGGCTGTGGACAATGCTGGTTATCGAGGTTGGGCGAGATTTGCGGTTTGTTTCTGCCCACTGGATTTTTTGCTTTTTGTGGATCACAATGACTGGAGCGCTTTGTCTTCCAACTCAAGCATGCAAGCTGCCGGATCCTCTGCCTCGATCCTTTCAGGGAGTATATCTTATCCCTTTCTTACTTAGATCTTATCCTATTTCTCTGTACAATGATTGCTTTGCCCTGGTTTTCATTGGGTTTAGGATTCTCCTCGTTACTTTTCGGTTTCTGAGTTTCGTTGGGTTTTCAAAACTACTTCCTTTAGATCATTTGCGTGTTGTTTTGTTTGCGTTTTCTGGCTTCCTAGATGATTTTCTAACTTCCCGAGTAACTGTCTTCCGCATGCGAGACCTGGTGGTCTCCAGCTTTAAGTGTTCCCCACGCACCGGGAGGTGTATAAATCGGCTCTACAGCTTGGTTATTCACTCCATGATTACCTACCTGAGTGTTTTCTTTGTGCCTCTGTTACCAATGGCTTTCAATTCTGTTTCCCAAGCTAATTTGGCCTCTAGCAGTCGTCGTCCCACCCTAGTTCGTCAGTATTTTCCTTTTCCCCGAAACCAAAATACCTCCGACTCTATCCCTGTTGTTATTGGGGATAATACCATCAATATTGAGAGATTTGCTGTCCAAATTGATATGCCACCTCCTCCACAGGATTTCGATAGCCACTATTCTAGATTCTGTCTCGTAGGAAAGATCTTCGGGCCTCTGGTCTCCCCTAACATTGTCTTCGCAAAGTGTCAAGAACTCTGGAATAATCTCAAAGGGGCTATCAACATGAGCAGATTACCCAATAATTGGTTTTGCTTTGAGTTTAATAACGAAGAAGATGTTCTGTTCATCCTCGACAACCGACCTTGGTACATTAGGAGTCGCATCTTCCGCATCCAACGCTGGAGCCCGGATTTCGATGCTACTGTCTCCTCCATTGATCGTCTGATCATATGGGTGAGGCTCCCAAATTTACCTCTTCCCCATTGGCATGAATCCTCGCTTAAACACCTGGGCCAATACCTTGGAACTTTTATTCAAGCGGATGAGTTTACCCTCACTGGTAAAAAAACCATGTTTGCCCGCATCAAGATTGAACTGGACCTACAATACCCACTTCGTAGGATGGCTCTGGTCAACAACCCTGATGGTAAACCCCCTAGCTTTGTCTTAGTGTCCTATGAGGTTATCTTTGAGATTTGTTTTCGTTGTGGCCTTTACGGTCAAAGAAACCATGTTTGTCCTAGAAGAAATATCAAAGACAGCTTCTTTATGGTCGAGAGATTGGAGCATGAGCAAGCGGTCTATCCTGCTGACATGGCAAACAGCGAGTTCATCAAACCACTCCTGTCAAATGACATTTCCATTATTTTCCCTCAACCCATGTTCAGTTATTATGAGCCGGGTGGCTTTAAGGCCAATAATGGTGACCGGTCTGAAAGTAATGCCTATGGTGACAATTATCCTGCTGACAGCCATTGGAGAATTGTTTCTAGGAGAGGTAAGGGGAGAGGACAGCGCTTTCCTAAGAATGGTCATTTGACACCAGGCCCTAATTCTGATAGACTGAAAGGCAACAATGTTGTTCTTCCTGGTGTGTCATTCAGAGATGTTGCTAAGGGTGAAGCTGAGGCTAATCATCATGCTATTGCTAATAGGAAACATAAGAAGATTGTGGTGGTTTCCTCTGATTCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

661

Amino Acids

76.12

Weight (kDa)

9.22

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 325 - 404 7e-14 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 1092
AccI GTMKAC 1 cut(s) 181
AccII CGCG 1 cut(s) 33
AciI CCGC 7 cut(s) 225, 295, 631, 1177, 1328, 1369, 1586
AclWI GGATC 4 cut(s) 341, 380, 393, 393
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 1 cut(s) 1255
AcvI CACGTG 1 cut(s) 120
AfaI GTAC 2 cut(s) 458, 1157
AfeI AGCGCT 2 cut(s) 351, 1805
AfiI CCNNNNNNNGG 6 cut(s) 44, 45, 166, 677, 1092, 1817
AgeI ACCGGT 1 cut(s) 1716
AgsI TTSAA 4 cut(s) 540, 772, 1325, 1382
AjnI CCWGG 6 cut(s) 159, 474, 642, 1296, 1831, 1876
AluBI AGCT 8 cut(s) 99, 379, 657, 705, 788, 1449, 1551, 1913
AluI AGCT 8 cut(s) 99, 379, 657, 705, 788, 1449, 1551, 1913
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 5 cut(s) 633, 655, 983, 1012, 1219
AlwI GGATC 4 cut(s) 341, 380, 393, 393
Ama87I CYCGRG 1 cut(s) 615
Aor51HI AGCGCT 2 cut(s) 351, 1805
AoxI GGCC 7 cut(s) 134, 795, 998, 1300, 1498, 1701, 1834
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 1255
AsiGI ACCGGT 1 cut(s) 1716
Asp700I GAANNNNTTC 2 cut(s) 1125, 1774
AspLEI GCGC 4 cut(s) 35, 230, 352, 1806
AspS9I GGNCC 4 cut(s) 998, 1300, 1387, 1835
AsuC2I CCSGG 4 cut(s) 138, 679, 1196, 1689
AsuHPI GGTGA 5 cut(s) 79, 1255, 1724, 1751, 1919
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 1387
BamHI GGATCC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 1196
BauI CACGAG 1 cut(s) 218
BbrPI CACGTG 1 cut(s) 120
BbsI GAAGAC 3 cut(s) 350, 619, 1015
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 1914
BbvI GCAGC 1 cut(s) 366
BccI CCATC 3 cut(s) 905, 1405, 1427
BciT130I CCWGG 6 cut(s) 161, 476, 644, 1298, 1833, 1878
BclI TGATCA 1 cut(s) 1233
BcnI CCSGG 4 cut(s) 138, 679, 1196, 1689
BcoDI GTCTC 5 cut(s) 633, 655, 983, 1012, 1219
BfaI CTAG 8 cut(s) 212, 596, 801, 821, 969, 1446, 1530, 1779
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 2 cut(s) 353, 1807
BglII AGATCT 2 cut(s) 437, 990
BisI GCNGC 2 cut(s) 226, 380
BlsI GCNGC 2 cut(s) 227, 381
Bme18I GGWCC 1 cut(s) 1387
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 4 cut(s) 998, 1300, 1387, 1835
BmiI GGNNCC 3 cut(s) 387, 1193, 1250
BmsI GCATC 4 cut(s) 1179, 1188, 1195, 1380
BpiI GAAGAC 3 cut(s) 350, 619, 1015
BpmI CTGGAG 4 cut(s) 160, 366, 637, 1210
Bpu10I CCTNAGC 2 cut(s) 1902, 1914
BpuEI CTTGAG 1 cut(s) 351
BpuMI CCSGG 4 cut(s) 138, 679, 1196, 1689
BsaAI YACGTR 1 cut(s) 120
BsaI GGTCTC 3 cut(s) 633, 655, 1012
BsaJI CCNNGG 5 cut(s) 159, 474, 1151, 1297, 1309
BsaWI WCCGGW 1 cut(s) 1716
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 45, 166, 677, 1092, 1817
Bse118I RCCGGY 1 cut(s) 1716
Bse1I ACTGG 5 cut(s) 177, 317, 349, 1351, 1389
BseBI CCWGG 6 cut(s) 161, 476, 644, 1298, 1833, 1878
BseDI CCNNGG 5 cut(s) 159, 474, 1151, 1297, 1309
BseGI GGATG 6 cut(s) 152, 175, 1134, 1179, 1336, 1416
BseLI CCNNNNNNNGG 6 cut(s) 44, 45, 166, 677, 1092, 1817
BseMII CTCAG 3 cut(s) 512, 725, 1905
BseNI ACTGG 5 cut(s) 177, 317, 349, 1351, 1389
BseRI GAGGAG 3 cut(s) 491, 930, 1207
BseXI GCAGC 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 7 cut(s) 136, 797, 1000, 1302, 1500, 1703, 1836
BshTI ACCGGT 1 cut(s) 1716
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 6 cut(s) 137, 383, 678, 1196, 1688, 1717
BslFI GGGAC 2 cut(s) 140, 798
BslI CCNNNNNNNGG 6 cut(s) 44, 45, 166, 677, 1092, 1817
BsmAI GTCTC 5 cut(s) 633, 655, 983, 1012, 1219
BsmFI GGGAC 2 cut(s) 140, 798
BsnI GGCC 7 cut(s) 136, 797, 1000, 1302, 1500, 1703, 1836
Bso31I GGTCTC 3 cut(s) 633, 655, 1012
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 2 cut(s) 219, 1196
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
BspACI CCGC 7 cut(s) 225, 295, 631, 1177, 1328, 1369, 1586
BspANI GGCC 7 cut(s) 136, 797, 1000, 1302, 1500, 1703, 1836
BspCNI CTCAG 3 cut(s) 513, 726, 1906
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 387, 1193, 1250
BspPI GGATC 4 cut(s) 341, 380, 393, 393
BspTNI GGTCTC 3 cut(s) 633, 655, 1012
BsrFI RCCGGY 1 cut(s) 1716
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 5 cut(s) 177, 317, 349, 1351, 1389
BssAI RCCGGY 1 cut(s) 1716
BssECI CCNNGG 5 cut(s) 159, 474, 1151, 1297, 1309
BssMI GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
BssNAI GTATAC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 2 cut(s) 1151, 1309
Bst1107I GTATAC 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 6 cut(s) 161, 476, 644, 1298, 1833, 1878
Bst4CI ACNGT 3 cut(s) 625, 1213, 1508
Bst6I CTCTTC 1 cut(s) 1269
BstAUI TGTACA 1 cut(s) 456
BstBAI YACGTR 1 cut(s) 120
BstC8I GCNNGC 5 cut(s) 373, 377, 635, 1369, 1584
BstDEI CTNAG 7 cut(s) 434, 521, 734, 1456, 1812, 1902, 1914
BstEII GGTNACC 1 cut(s) 1712
BstF5I GGATG 6 cut(s) 152, 175, 1134, 1179, 1336, 1416
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 353, 1807
BstHHI GCGC 4 cut(s) 35, 230, 352, 1806
BstKTI GATC 8 cut(s) 336, 388, 401, 440, 559, 993, 1228, 1236
BstMAI GTCTC 5 cut(s) 633, 655, 983, 1012, 1219
BstMBI GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
BstMWI GCNNNNNNNGC 6 cut(s) 32, 292, 794, 1176, 1185, 1604
BstNI CCWGG 6 cut(s) 161, 476, 644, 1298, 1833, 1878
BstNSI RCATGY 2 cut(s) 375, 637
BstPI GGTNACC 1 cut(s) 1712
BstSFI CTRYAG 1 cut(s) 700
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 3 cut(s) 350, 619, 1015
BstX2I RGATCY 3 cut(s) 385, 437, 990
BstXI CCANNNNNNTGG 1 cut(s) 1310
BstYI RGATCY 3 cut(s) 385, 437, 990
BstZ17I GTATAC 1 cut(s) 182
BsuRI GGCC 7 cut(s) 136, 797, 1000, 1302, 1500, 1703, 1836
BtsCI GGATG 6 cut(s) 152, 175, 1134, 1179, 1336, 1416
BtsIMutI CAGTG 2 cut(s) 310, 1344
Cac8I GCNNGC 5 cut(s) 373, 377, 635, 1369, 1584
CfoI GCGC 4 cut(s) 35, 230, 352, 1806
Cfr10I RCCGGY 1 cut(s) 1716
Cfr13I GGNCC 4 cut(s) 998, 1300, 1387, 1835
CsiI ACCWGGT 1 cut(s) 642
Csp6I GTAC 2 cut(s) 457, 1156
CspAI ACCGGT 1 cut(s) 1716
CviQI GTAC 2 cut(s) 457, 1156
DdeI CTNAG 7 cut(s) 434, 521, 734, 1456, 1812, 1902, 1914
DpnI GATC 8 cut(s) 335, 387, 400, 439, 558, 992, 1227, 1235
DpnII GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 1269
EarI CTCTTC 1 cut(s) 1269
Eco130I CCWWGG 2 cut(s) 1151, 1309
Eco24I GRGCYC 1 cut(s) 1196
Eco31I GGTCTC 3 cut(s) 633, 655, 1012
Eco47I GGWCC 1 cut(s) 1387
Eco47III AGCGCT 2 cut(s) 351, 1805
Eco72I CACGTG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 615
Eco91I GGTNACC 1 cut(s) 1712
EcoO109I RGGNCCY 1 cut(s) 1835
EcoO65I GGTNACC 1 cut(s) 1712
EcoRII CCWGG 6 cut(s) 159, 474, 642, 1296, 1831, 1876
EcoT14I CCWWGG 2 cut(s) 1151, 1309
EcoT38I GRGCYC 1 cut(s) 1196
ErhI CCWWGG 2 cut(s) 1151, 1309
FaqI GGGAC 2 cut(s) 140, 798
FauI CCCGC 1 cut(s) 1376
FauNDI CATATG 1 cut(s) 1238
FbaI TGATCA 1 cut(s) 1233
FblI GTMKAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 226, 380
FokI GGATG 6 cut(s) 139, 182, 1121, 1166, 1343, 1423
FriOI GRGCYC 1 cut(s) 1196
Fsp4HI GCNGC 2 cut(s) 226, 380
FspBI CTAG 8 cut(s) 212, 596, 801, 821, 969, 1446, 1530, 1779
GlaI GCGC 4 cut(s) 34, 229, 351, 1805
GluI GCNGC 2 cut(s) 226, 380
GsuI CTGGAG 4 cut(s) 160, 366, 637, 1210
HaeII RGCGCY 2 cut(s) 353, 1807
HaeIII GGCC 7 cut(s) 136, 797, 1000, 1302, 1500, 1703, 1836
HapII CCGG 6 cut(s) 137, 383, 678, 1196, 1688, 1717
HhaI GCGC 4 cut(s) 35, 230, 352, 1806
Hin6I GCGC 4 cut(s) 33, 228, 350, 1804
HinP1I GCGC 4 cut(s) 33, 228, 350, 1804
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HinfI GANTC 9 cut(s) 70, 141, 173, 496, 866, 972, 1165, 1280, 1976
HpaII CCGG 6 cut(s) 137, 383, 678, 1196, 1688, 1717
HphI GGTGA 5 cut(s) 79, 1255, 1724, 1751, 1919
Hpy166II GTNNAC 5 cut(s) 182, 261, 1338, 1423, 1439
Hpy188I TCNGA 7 cut(s) 522, 865, 1233, 1723, 1846, 1892, 1975
Hpy188III TCNNGA 7 cut(s) 109, 615, 969, 1037, 1045, 1375, 1564
Hpy8I GTNNAC 5 cut(s) 182, 261, 1338, 1423, 1439
Hpy99I CGWCG 1 cut(s) 813
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 3 cut(s) 625, 1213, 1508
HpyCH4IV ACGT 2 cut(s) 119, 184
HpyCH4V TGCA 3 cut(s) 189, 195, 375
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 292, 794, 1176, 1185, 1604
HpyF3I CTNAG 7 cut(s) 434, 521, 734, 1456, 1812, 1902, 1914
HpySE526I ACGT 2 cut(s) 119, 184
HspAI GCGC 4 cut(s) 33, 228, 350, 1804
Ksp22I TGATCA 1 cut(s) 1233
Kzo9I GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
LmnI GCTCC 4 cut(s) 347, 1191, 1254, 1573
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 4 cut(s) 1179, 1188, 1195, 1380
MabI ACCWGGT 1 cut(s) 642
MaeI CTAG 8 cut(s) 212, 596, 801, 821, 969, 1446, 1530, 1779
MaeII ACGT 2 cut(s) 119, 184
MaeIII GTNAC 5 cut(s) 505, 619, 756, 1712, 1739
MalI GATC 8 cut(s) 335, 387, 400, 439, 558, 992, 1227, 1235
MboI GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 3 cut(s) 385, 437, 990
MhlI GDGCHC 2 cut(s) 219, 1196
MlyI GAGTC 3 cut(s) 167, 860, 1174
MmeI TCCRAC 3 cut(s) 386, 888, 1207
MroXI GAANNNNTTC 2 cut(s) 1125, 1774
MseI TTAA 4 cut(s) 660, 1110, 1290, 1698
MslI CAYNNNNRTG 3 cut(s) 564, 1241, 1275
MspI CCGG 6 cut(s) 137, 383, 678, 1196, 1688, 1717
MunI CAATTG 1 cut(s) 190
MvaI CCWGG 6 cut(s) 161, 476, 644, 1298, 1833, 1878
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 6 cut(s) 32, 292, 794, 1176, 1185, 1604
NciI CCSGG 4 cut(s) 138, 679, 1196, 1689
NdeI CATATG 1 cut(s) 1238
NdeII GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
NlaIV GGNNCC 3 cut(s) 387, 1193, 1250
NmuCI GTSAC 2 cut(s) 1712, 1739
NspI RCATGY 2 cut(s) 375, 637
PaeI GCATGC 2 cut(s) 375, 637
PdmI GAANNNNTTC 2 cut(s) 1125, 1774
PfeI GAWTC 6 cut(s) 70, 141, 496, 972, 1280, 1976
PflMI CCANNNNNTGG 1 cut(s) 1092
PinAI ACCGGT 1 cut(s) 1716
PkrI GCNGC 2 cut(s) 227, 381
PleI GAGTC 3 cut(s) 167, 860, 1173
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
PpsI GAGTC 3 cut(s) 167, 860, 1173
Ppu21I YACGTR 1 cut(s) 120
Psp6I CCWGG 6 cut(s) 159, 474, 642, 1296, 1831, 1876
PspCI CACGTG 1 cut(s) 120
PspEI GGTNACC 1 cut(s) 1712
PspGI CCWGG 6 cut(s) 159, 474, 642, 1296, 1831, 1876
PspN4I GGNNCC 3 cut(s) 387, 1193, 1250
PspPI GGNCC 4 cut(s) 998, 1300, 1387, 1835
PsrI GAACNNNNNNTAC 2 cut(s) 1374, 1406
PsuI RGATCY 3 cut(s) 385, 437, 990
RsaI GTAC 2 cut(s) 458, 1157
RsaNI GTAC 2 cut(s) 457, 1156
RseI CAYNNNNRTG 3 cut(s) 564, 1241, 1275
SaqAI TTAA 4 cut(s) 660, 1110, 1290, 1698
SatI GCNGC 2 cut(s) 226, 380
Sau3AI GATC 8 cut(s) 333, 385, 398, 437, 556, 990, 1225, 1233
Sau96I GGNCC 4 cut(s) 998, 1300, 1387, 1835
SchI GAGTC 3 cut(s) 167, 860, 1174
SduI GDGCHC 2 cut(s) 219, 1196
SexAI ACCWGGT 1 cut(s) 642
SfaNI GCATC 4 cut(s) 1179, 1188, 1195, 1380
SfcI CTRYAG 1 cut(s) 700
SinI GGWCC 1 cut(s) 1387
SmiMI CAYNNNNRTG 3 cut(s) 564, 1241, 1275
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SphI GCATGC 2 cut(s) 375, 637
SsiI CCGC 7 cut(s) 225, 295, 631, 1177, 1328, 1369, 1586
SspI AATATT 1 cut(s) 904
SspMI CTAG 8 cut(s) 212, 596, 801, 821, 969, 1446, 1530, 1779
StyI CCWWGG 2 cut(s) 1151, 1309
TaaI ACNGT 3 cut(s) 625, 1213, 1508
TaiI ACGT 2 cut(s) 122, 187
TaqI TCGA 7 cut(s) 68, 276, 397, 954, 1140, 1203, 1563
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 6 cut(s) 70, 141, 496, 972, 1280, 1976
Tru1I TTAA 4 cut(s) 660, 1110, 1290, 1698
Tru9I TTAA 4 cut(s) 660, 1110, 1290, 1698
TscAI CASTG 2 cut(s) 317, 1351
TseFI GTSAC 2 cut(s) 1712, 1739
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 2 cut(s) 1712, 1739
TspDTI ATGAA 4 cut(s) 472, 1123, 1293, 1609
TspRI CASTG 2 cut(s) 317, 1351
Van91I CCANNNNNTGG 1 cut(s) 1092
VpaK11BI GGWCC 1 cut(s) 1387
XapI RAATTY 1 cut(s) 1255
XbaI TCTAGA 1 cut(s) 968
XceI RCATGY 2 cut(s) 375, 637
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 2 cut(s) 1125, 1774
XspI CTAG 8 cut(s) 212, 596, 801, 821, 969, 1446, 1530, 1779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.