Rh2BG192700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000182
Physical Location & Seq
Forward (+)
17415041 .. 17415436
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG192700.1

Sequence Viewer

Length: 396 bp
ATGAGTCCACCTCTGAAGGCGGAAAAGTCTGCTTCTCACATACCAGGGTCAATTGTTGAGCCCATACCAGTTATGATCGAGGACACCACGATCAACATTGATCGTTTTGCTGCCCATGTAGAATTGCCACCACCACTTGCAGACCGTATCTCCCATTTCTCTAGGCTTTGCCTTGTCGGTAAAGTGTTTGGTACGTTCATGTCGGCTGAAGCTGTGATCAATAGGTTTCATGAATGCTGGAACCAGTTGCGTGGCTCTGTTACTATTAGGCAACTCATCAACAGCTGGTTCAGCTTTGAATTCACTGAGGAAGAGGTTAACTGGCATGGTTATCTAATCATGTGGTATTCTAAATCGTTCATAGATTTGTTGATGCTAGGAAAACCTCTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

131

Amino Acids

15.01

Weight (kDa)

5.69

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 299
AcuI CTGAAG 2 cut(s) 35, 228
AfaI GTAC 1 cut(s) 193
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 212, 285, 294
AluI AGCT 3 cut(s) 212, 285, 294
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 299
BanII GRGCYC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 1 cut(s) 216
BfaI CTAG 3 cut(s) 162, 377, 389
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 363
BplI GAGNNNNNCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bse1I ACTGG 3 cut(s) 68, 244, 326
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 3 cut(s) 68, 244, 326
BseXI GCAGC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 4 cut(s) 75, 90, 100, 216
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 298
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 242
BsrI ACTGG 3 cut(s) 68, 244, 326
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 4 cut(s) 75, 90, 100, 216
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 306
BstKTI GATC 4 cut(s) 78, 93, 103, 219
BstMBI GATC 4 cut(s) 75, 90, 100, 216
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 303
CciI TCATGA 1 cut(s) 229
Csp6I GTAC 1 cut(s) 192
CviAII CATG 5 cut(s) 116, 199, 230, 326, 340
CviJI RGCY 7 cut(s) 61, 166, 206, 212, 255, 285, 294
CviKI_1 RGCY 7 cut(s) 61, 166, 206, 212, 255, 285, 294
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 77, 92, 102, 218
DpnII GATC 4 cut(s) 75, 90, 100, 216
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 35, 228
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 5 cut(s) 119, 202, 233, 329, 343
FaiI YATR 9 cut(s) 41, 65, 74, 117, 200, 231, 327, 341, 362
FatI CATG 5 cut(s) 115, 198, 229, 325, 339
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 111
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 3 cut(s) 162, 377, 389
GluI GCNGC 1 cut(s) 111
Hin1II CATG 5 cut(s) 119, 202, 233, 329, 343
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 1 cut(s) 4
HpaI GTTAAC 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 8, 319
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 230, 389
Hpy8I GTNNAC 2 cut(s) 8, 319
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 5 cut(s) 119, 202, 233, 329, 343
Ksp22I TGATCA 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 319
Kzo9I GATC 4 cut(s) 75, 90, 100, 216
LpnPI CCDG 7 cut(s) 30, 57, 81, 223, 257, 271, 307
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 363
MaeI CTAG 3 cut(s) 162, 377, 389
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 77, 92, 102, 218
MboI GATC 4 cut(s) 75, 90, 100, 216
MboII GAAGA 1 cut(s) 323
MfeI CAATTG 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 3 cut(s) 51, 122, 299
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 21, 73, 301, 307, 396
MseI TTAA 2 cut(s) 318, 394
MspA1I CMGCKG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 4 cut(s) 75, 90, 100, 216
NlaIII CATG 5 cut(s) 119, 202, 233, 329, 343
NlaIV GGNNCC 1 cut(s) 242
PagI TCATGA 1 cut(s) 229
PctI GAATGC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 285
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 318, 394
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 4 cut(s) 75, 90, 100, 216
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 63
SetI ASST 8 cut(s) 13, 197, 214, 227, 287, 296, 318, 388
SfaNI GCATC 1 cut(s) 363
Sse9I AATT 3 cut(s) 51, 122, 299
SsiI CCGC 1 cut(s) 20
SspMI CTAG 3 cut(s) 162, 377, 389
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 78
TasI AATT 3 cut(s) 51, 122, 299
Tru1I TTAA 2 cut(s) 318, 394
Tru9I TTAA 2 cut(s) 318, 394
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 187, 218, 246, 349
TspRI CASTG 1 cut(s) 310
XapI RAATTY 1 cut(s) 299
XbaI TCTAGA 1 cut(s) 388
XspI CTAG 3 cut(s) 162, 377, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.