Rorug07G0191000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000182
Physical Location & Seq
Reverse (-)
16210811 .. 16213003
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0191000.1

Sequence Viewer

Length: 450 bp
ATGCTCTGCACTTCGCTCCTCGCAGCTCATCGTGATCAAGAGTTTGTCTGTGATGGCAAAGACGACTCTTCCAGTGGTGAGGAAAACATAGAGACCCAGCAAAGCTTCGTAGAGTTAGAGGAAGCATCAGTTTCCTGGAATGGAGTTGATCGTTCGAGAATTTTCATTTCATCAGCTGAATGCCAATTTACTCTGGCCGGGGACATTTGCATTTGCAGAATGGTTAATTCAAAACAGATGGCCCCTGTGTTCGCAAATTCAATCAAGGTACAAGAGTTTCTGTACTTTATTTATGTTGGGGTTGACAATTCGGGCAAGACTAGGATTGTGCTCACGATTAATGGGGAGGACACCAGCCTTGTCACTCCCACTCTCGACTTCAACATCAACACCCTCACTTACCAAAACTCCAACTTCAATGGGGAAACAAAAGGCATCCGTAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

4.56

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 91 - 140 4.2e-08 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 2 cut(s) 159, 256
AfaI GTAC 2 cut(s) 270, 284
AgsI TTSAA 4 cut(s) 231, 261, 382, 418
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 26, 105, 176
AluI AGCT 3 cut(s) 26, 105, 176
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 1 cut(s) 86
AoxI GGCC 2 cut(s) 195, 240
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 159, 256
AseI ATTAAT 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 47, 232
BciT130I CCWGG 1 cut(s) 136
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 136, 199
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 136, 199
BmsI GCATC 2 cut(s) 134, 444
BpuMI CCSGG 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 8
BseXI GCAGC 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 2 cut(s) 197, 242
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 2 cut(s) 197, 242
Bso31I GGTCTC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 34, 148
BspANI GGCC 2 cut(s) 197, 242
BspLI GGNNCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 2 cut(s) 34, 148
Bst2UI CCWGG 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 435
BstKTI GATC 2 cut(s) 37, 151
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 34, 148
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 134, 197
BstV1I GCAGC 1 cut(s) 35
BsuRI GGCC 2 cut(s) 197, 242
BtsCI GGATG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 269, 283
CviJI RGCY 6 cut(s) 26, 105, 176, 197, 242, 357
CviKI_1 RGCY 6 cut(s) 26, 105, 176, 197, 242, 357
CviQI GTAC 2 cut(s) 269, 283
DpnI GATC 2 cut(s) 36, 150
DpnII GATC 2 cut(s) 34, 148
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 134
FaiI YATR 2 cut(s) 89, 294
FaqI GGGAC 1 cut(s) 215
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 321
GluI GCNGC 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 2 cut(s) 197, 242
HapII CCGG 1 cut(s) 198
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 304
Hpy188III TCNNGA 5 cut(s) 32, 38, 156, 334, 374
Hpy8I GTNNAC 1 cut(s) 304
HpyCH4V TGCA 3 cut(s) 9, 210, 216
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 148
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 8 cut(s) 85, 110, 121, 148, 179, 211, 258, 367
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 134, 444
MaeI CTAG 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 36, 150
MboI GATC 2 cut(s) 34, 148
MboII GAAGA 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 333
MluCI AATT 5 cut(s) 159, 185, 226, 256, 307
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 5 cut(s) 29, 73, 112, 340, 404
MseI TTAA 2 cut(s) 225, 339
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 2 cut(s) 136, 199
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 1 cut(s) 136
NciI CCSGG 1 cut(s) 199
NdeII GATC 2 cut(s) 34, 148
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 361
PctI GAATGC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 134
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PshBI ATTAAT 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 2 cut(s) 270, 284
RsaNI GTAC 2 cut(s) 269, 283
SaqAI TTAA 2 cut(s) 225, 339
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 34, 148
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 136, 199
SduI GDGCHC 1 cut(s) 333
SetI ASST 4 cut(s) 28, 107, 178, 270
SfaNI GCATC 2 cut(s) 134, 444
Sse9I AATT 5 cut(s) 159, 185, 226, 256, 307
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 134, 197
TaqI TCGA 2 cut(s) 155, 375
TasI AATT 5 cut(s) 159, 185, 226, 256, 307
TatI WGTACW 1 cut(s) 282
Tru1I TTAA 2 cut(s) 225, 339
Tru9I TTAA 2 cut(s) 225, 339
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 154, 159
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 79
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 2 cut(s) 159, 256
XspI CTAG 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.