Rroxscaffold_7G00195890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000182
Physical Location & Seq
Forward (+)
38480755 .. 38489202
8448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195890.1

Sequence Viewer

Length: 570 bp
ATGTCTCTATTATTTTCCCTCACCTCTAGGGGCAAACCAATTCCCCATGGCTTCGATATCCCCTCCGAGAATCAAGATGATGGCTCTTGGAAAATTGTTTCCAGAAAAGGAAAGGGGAAGGATGCTAGGTTCTCAAAGATGGGTACACTTCCTCACAAGTCGGCAAGTTTTTGCATCCGAAATAATGCTCTTGTTGTCCCGTGTCGTTCTTTTAAGGATGCAGCTGCTAGGAGTGATGGACACCTTGCTATCCCGACAAAAAAGAAGGAACCCCAATTTTTGGATGATGAAAAATGTATTTCTTTTCCTAGCAGCAGATGTATGATCACTTTGCACATCATGCTTGACAAAATGAAGAACAATGGTCCACTACAAATGCAGTGGTGCAGCAAGTGGATGGGTTCATCCCAGAGCAGATTGAGTGACATAAGTGATGATGGTCGCAGTGGTTTTCTGATTTCTCCTATCGCCGGGTGCAATGCGGATGGTGACTATTCTAACCACCTTTGGAAACTACATCGTAAAGTCATCGATGATGGGGTGGATTGGCTAGGATTAGAAGCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.06

Weight (kDa)

9.05

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 1 cut(s) 482
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 2 cut(s) 280, 470
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 221, 224, 312, 387
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 13, 500
AvaII GGWCC 1 cut(s) 365
BbvI GCAGC 4 cut(s) 211, 233, 324, 399
BccI CCATC 7 cut(s) 74, 133, 230, 391, 431, 479, 530
BclI TGATCA 1 cut(s) 324
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 6 cut(s) 27, 126, 228, 309, 551, 568
BisI GCNGC 4 cut(s) 222, 225, 313, 388
BlsI GCNGC 4 cut(s) 223, 226, 314, 389
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 3 cut(s) 112, 183, 208
BpuMI CCSGG 1 cut(s) 472
Bsa29I ATCGAT 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 470
Bse3DI GCAATG 1 cut(s) 484
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 7 cut(s) 127, 174, 223, 289, 402, 404, 490
BseLI CCNNNNNNNGG 2 cut(s) 280, 470
BseMI GCAATG 1 cut(s) 484
BseXI GCAGC 4 cut(s) 211, 233, 324, 399
BsgI GTGCAG 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 531
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 280, 470
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 1 cut(s) 482
BspDI ATCGAT 1 cut(s) 531
BspLI GGNNCC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 484
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 7 cut(s) 127, 174, 223, 289, 402, 404, 490
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 470
BstV1I GCAGC 4 cut(s) 211, 233, 324, 399
Bsu15I ATCGAT 1 cut(s) 531
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 7 cut(s) 127, 174, 223, 289, 402, 404, 490
BtsI GCAGTG 2 cut(s) 386, 451
BtsIMutI CAGTG 2 cut(s) 386, 451
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 531
Csp6I GTAC 1 cut(s) 144
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 2 cut(s) 47, 340
CviJI RGCY 5 cut(s) 51, 84, 224, 550, 563
CviKI_1 RGCY 5 cut(s) 51, 84, 224, 550, 563
CviQI GTAC 1 cut(s) 144
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 46
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 365
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 50, 343
FaiI YATR 4 cut(s) 48, 323, 341, 428
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 46, 339
FbaI TGATCA 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 222, 225, 313, 388
FokI GGATG 7 cut(s) 134, 161, 230, 296, 391, 409, 497
Fsp4HI GCNGC 4 cut(s) 222, 225, 313, 388
FspBI CTAG 6 cut(s) 27, 126, 228, 309, 551, 568
GluI GCNGC 4 cut(s) 222, 225, 313, 388
HapII CCGG 1 cut(s) 471
Hin1II CATG 2 cut(s) 50, 343
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 471
HphI GGTGA 2 cut(s) 13, 500
Hpy166II GTNNAC 2 cut(s) 146, 368
Hpy188I TCNGA 3 cut(s) 67, 179, 456
Hpy188III TCNNGA 3 cut(s) 74, 102, 253
Hpy8I GTNNAC 2 cut(s) 146, 368
HpyAV CCTTC 2 cut(s) 112, 259
HpyCH4V TGCA 6 cut(s) 174, 221, 334, 379, 387, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
Hsp92II CATG 2 cut(s) 50, 343
Ksp22I TGATCA 1 cut(s) 324
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 3 cut(s) 115, 422, 484
Lsp1109I GCAGC 4 cut(s) 211, 233, 324, 399
LweI GCATC 3 cut(s) 112, 183, 208
MaeI CTAG 6 cut(s) 27, 126, 228, 309, 551, 568
MaeIII GTNAC 2 cut(s) 422, 488
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 1 cut(s) 367
MluCI AATT 3 cut(s) 39, 93, 275
MnlI CCTC 4 cut(s) 29, 34, 73, 162
MseI TTAA 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 340
NciI CCSGG 1 cut(s) 472
NcoI CCATGG 1 cut(s) 46
NdeII GATC 1 cut(s) 324
NlaIII CATG 2 cut(s) 50, 343
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 422, 488
PfeI GAWTC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 4 cut(s) 223, 226, 314, 389
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 222, 225, 313, 388
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 472
SetI ASST 5 cut(s) 26, 131, 226, 246, 507
SfaNI GCATC 3 cut(s) 112, 183, 208
SinI GGWCC 1 cut(s) 365
Sse9I AATT 3 cut(s) 39, 93, 275
SsiI CCGC 1 cut(s) 482
SspMI CTAG 6 cut(s) 27, 126, 228, 309, 551, 568
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 2 cut(s) 54, 531
TasI AATT 3 cut(s) 39, 93, 275
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 386, 451
TseFI GTSAC 2 cut(s) 422, 488
TseI GCWGC 4 cut(s) 221, 224, 312, 387
Tsp45I GTSAC 2 cut(s) 422, 488
TspDTI ATGAA 3 cut(s) 303, 368, 393
TspRI CASTG 2 cut(s) 386, 451
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 365
XspI CTAG 6 cut(s) 27, 126, 228, 309, 551, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.