Rh7AG412000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000182
Physical Location & Seq
Forward (+)
55172384 .. 55186261
13878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG412000.1

Sequence Viewer

Length: 243 bp
ATGGAAGTGGACTATGAGGTGAAAGCACTGACTTTAGAGAACAAGTCTGACAATGCTGATCTTAACCACCCCTCCCCGCACTGGACCTATGTGAAATGCCAGAACAAGTCTTCCGATTCCAAGGCTACTCCAACGAAGAGCTCTAATCAAGCTAAAAAATTTACTGGTATGGTTAGAGACCTTGGCAACAAGGGTAAAGCAGTTCTAGGCAGTAAGCCCCAAGCCATGACAGGTGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.66

Weight (kDa)

9.34

Isoelectric Point (pI)

22.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 81
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 141, 152
AluI AGCT 2 cut(s) 141, 152
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 171
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 31
AvaII GGWCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 120, 181
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 2 cut(s) 86, 169
BseDI CCNNGG 2 cut(s) 120, 181
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 2 cut(s) 86, 169
BsiHKAI GWGCWC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 58, 236
BspACI CCGC 1 cut(s) 77
BspQI GCTCTTC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 86, 169
BssECI CCNNGG 2 cut(s) 120, 181
BssMI GATC 2 cut(s) 58, 236
BssT1I CCWWGG 2 cut(s) 120, 181
Bst6I CTCTTC 1 cut(s) 131
BstKTI GATC 2 cut(s) 61, 239
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 58, 236
BstV2I GAAGAC 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 26, 79
Cfr13I GGNCC 1 cut(s) 84
CviAII CATG 1 cut(s) 226
CviJI RGCY 5 cut(s) 125, 141, 152, 217, 224
CviKI_1 RGCY 5 cut(s) 125, 141, 152, 217, 224
DpnI GATC 2 cut(s) 60, 238
DpnII GATC 2 cut(s) 58, 236
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 120, 181
Eco24I GRGCYC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 120, 181
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 2 cut(s) 120, 181
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 15, 90, 170, 227, 241
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 143
FspBI CTAG 1 cut(s) 206
Hin1II CATG 1 cut(s) 229
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 49, 115
Hpy8I GTNNAC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 229
Kzo9I GATC 2 cut(s) 58, 236
LguI GCTCTTC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 67, 113, 150, 216
MaeI CTAG 1 cut(s) 206
MalI GATC 2 cut(s) 60, 238
MboI GATC 2 cut(s) 58, 236
MboII GAAGA 2 cut(s) 102, 148
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 2 cut(s) 10, 82
MseI TTAA 1 cut(s) 63
NdeII GATC 2 cut(s) 58, 236
NlaIII CATG 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 143
PspPI GGNCC 1 cut(s) 84
SacI GAGCTC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 2 cut(s) 58, 236
Sau96I GGNCC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 143
SetI ASST 6 cut(s) 21, 89, 143, 154, 183, 235
SinI GGWCC 1 cut(s) 84
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 143
StyI CCWWGG 2 cut(s) 120, 181
TasI AATT 1 cut(s) 158
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 33, 86
TspRI CASTG 2 cut(s) 33, 86
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 158
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.