Rh2BG356900

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000182
Physical Location & Seq
Forward (+)
49224597 .. 49237655
13059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG356900.1

Sequence Viewer

Length: 396 bp
ATGGGTTCACTTCCCTACAAGTCTGCAAGTTTTAGCATCCGAAACAATGCTCTTGTTATCCCAGGTTGTTCTTTTAAGGATGCAGCTGCTAAGAGTGATGGACGCCCTGCTATCCCGAGAAAAAAGAAGGACGTAATTGTGCTCTCTGATTCATCGCAAGAGGTGGATCAATACTTGGATGCTGAGGAAGCTCCTAAGCAGGGAGAGATTGATGCCATGTTCAGTGGTAGTAGATTTTTGGAAAGATTTAGAGGGAAGCGCATACTGTTTGTAGGAGACTCACTGAGTATGAATCAATGGCAGTCCCTCACATGCATGCTTTACAAATCAGTGCAAGCCAAATACACCATAAACAGGATTGGAGGCCTCTCCATATTCAGCTTTCCAGTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

131

Amino Acids

14.51

Weight (kDa)

9.36

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 73 - 128 2.7e-16 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 200, 354
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 4 cut(s) 86, 191, 381, 393
AluI AGCT 4 cut(s) 86, 191, 381, 393
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 2 cut(s) 83, 86
AspLEI GCGC 1 cut(s) 261
AvaI CYCGRG 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 144
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 73, 95
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 394
BisI GCNGC 2 cut(s) 84, 87
BlsI GCNGC 2 cut(s) 85, 88
Bme1390I CCNGG 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 4 cut(s) 45, 70, 169, 202
Bpu10I CCTNAGC 2 cut(s) 183, 195
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 354
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 3 cut(s) 36, 85, 184
BseLI CCNNNNNNNGG 2 cut(s) 200, 354
BseMII CTCAG 2 cut(s) 174, 275
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 73, 95
BshFI GGCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 200, 354
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 166
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 2 cut(s) 175, 276
BspPI GGATC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 317, 336
BstDEI CTNAG 4 cut(s) 90, 183, 195, 284
BstF5I GGATG 3 cut(s) 36, 85, 184
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 315, 319
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 73, 95
BsuRI GGCC 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 36, 85, 184
BtsIMutI CAGTG 3 cut(s) 229, 281, 336
Cac8I GCNNGC 2 cut(s) 317, 336
CfoI GCGC 1 cut(s) 261
CseI GACGC 1 cut(s) 111
CviAII CATG 3 cut(s) 217, 312, 316
CviJI RGCY 6 cut(s) 86, 191, 338, 366, 381, 393
CviKI_1 RGCY 6 cut(s) 86, 191, 338, 366, 381, 393
DdeI CTNAG 4 cut(s) 90, 183, 195, 284
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco147I AGGCCT 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 317
FaeI CATG 3 cut(s) 220, 315, 319
FaiI YATR 7 cut(s) 218, 263, 290, 313, 317, 350, 374
FaqI GGGAC 1 cut(s) 289
FatI CATG 3 cut(s) 216, 311, 315
Fnu4HI GCNGC 2 cut(s) 84, 87
FokI GGATG 3 cut(s) 23, 92, 191
Fsp4HI GCNGC 2 cut(s) 84, 87
FspBI CTAG 1 cut(s) 394
GlaI GCGC 1 cut(s) 260
GluI GCNGC 2 cut(s) 84, 87
HaeIII GGCC 1 cut(s) 366
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 3 cut(s) 220, 315, 319
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 3 cut(s) 149, 278, 292
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 41, 148
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 26, 83, 315, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 4 cut(s) 90, 183, 195, 284
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 3 cut(s) 220, 315, 319
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 48, 75, 120, 185, 340
Lsp1109I GCAGC 2 cut(s) 73, 95
LweI GCATC 4 cut(s) 45, 70, 169, 202
MaeI CTAG 1 cut(s) 394
MaeII ACGT 1 cut(s) 132
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 6 cut(s) 154, 178, 245, 317, 356, 377
Mph1103I ATGCAT 1 cut(s) 317
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 220, 315, 319
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 2 cut(s) 315, 319
PaeI GCATGC 1 cut(s) 319
PceI AGGCCT 1 cut(s) 366
PfeI GAWTC 2 cut(s) 149, 292
PkrI GCNGC 2 cut(s) 85, 88
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 2 cut(s) 84, 87
Sau3AI GATC 1 cut(s) 166
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 67, 88, 135, 165, 193, 383, 395
SfaNI GCATC 4 cut(s) 45, 70, 169, 202
SmiMI CAYNNNNRTG 1 cut(s) 314
SphI GCATGC 1 cut(s) 319
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 366
SspMI CTAG 1 cut(s) 394
StuI AGGCCT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 135
TasI AATT 1 cut(s) 135
TfiI GAWTC 2 cut(s) 149, 292
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 229, 288, 336
TseI GCWGC 2 cut(s) 83, 86
TspDTI ATGAA 2 cut(s) 141, 305
TspRI CASTG 3 cut(s) 229, 288, 336
XceI RCATGY 2 cut(s) 315, 319
XspI CTAG 1 cut(s) 394
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.