Rh5BG396700

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000182
Physical Location & Seq
Reverse (-)
64179057 .. 64179896
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG396700.1

Sequence Viewer

Length: 840 bp
ATGTTTGCCCGTATCAAGATTGAGCTGGACCTACGATACCCACTTCGTAGGATGGCTCTGGTTAACAACCCTGATGGTAAACCCCCTAGCTTTGTCTTAGTGTCCTATGACGTTATCTTTGAGATTTGTTTTCGTTGTGGCCTTTATCGTCAAAGAAACCATGTCTGTCCTAGAAGAAATATCAAAGACAGCTTCTTTATGGTCGAGAGATTGGAGCATGAGCAAGCGGTCTATCCAGCTGACATGGCAAACAGCGAGTTCATCAAACCACTCCTGTCAAATGACATTTCCATCATTTTCCCTCAACCCATGTTCAGTTATTATGAGCCGGGTGGCTTTAAGGCCAATAATGCTGACCGGTCTGAAAGTAATGCCTATGGTGACAATGATCTGGCTGACAACCATTGGAGAATTGTTTCTAGGAGAGGTAAGGGGAGAGGACAGCGCTTTCCCAAGAATGGTCATTTGACCCCAGGCCCCAATTCTGATAGACCGAAAGGCAACAATGTTGTTCTTCCTGGGGTGTCTTTCAGAGATGTTGCTAAGGGTGAAGCTGAGGCTAATCATCATGCTATCGCTAATAGGAAACATAAGGAGATTGTGGTGGTTTCCTCTGATTCCTCCCAAGAGGTGGATCAGTTCCTTGATGCTTTTGATCCCAAGTTTGGTGATATCGATGCTCTCCTAAAAAATAATGTTAACTTTCCTGTTCCTGGTTCCTCTGGTGCTGGTCCTGTGGCACCGAGTCCAAAAAAGAGAACTAGGCAGACGTTGGAAATGATGGAAACAAGTGACTGCCAGAATATTGAATCAACCTCCAACCAACCTGTTGTCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

279

Amino Acids

31.36

Weight (kDa)

8.29

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000182)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21471 FvH4_1g27953 FvH4_1g28801 FvH4_2g14522 FvH4_3g04280 FvH4_3g28251 FvH4_4g07491 FvH4_4g30262
malus_domestica MD10G1046400.v1.1 MD10G1126900.v1.1 MD11G1236100.v1.1
prunus_persica Prupe.1G148300_v2.0.a1 Prupe.2G036800_v2.0.a1 Prupe.8G054600_v2.0.a1 Prupe.8G054700_v2.0.a1
pyrus_communis pycom05g05520 pycom08g11160 pycom13g29480
rosa_chinensis RchiOBHm_Chr7g0182921 RchiOBHm_Chr7g0230111
rosa_laevigata RLG00000000536 RLG00000001385 RLG00000001492 RLG00000002640 RLG00000003082 RLG00000005042 RLG00000007254 RLG00000007773 RLG00000008594 RLG00000009508 RLG00000010355 RLG00000013369 RLG00000014370 RLG00000014371 RLG00000018745 RLG00000020268 RLG00000020832 RLG00000022569 RLG00000028073 RLG00000028388 RLG00000028677 RLG00000035645
rosa_multiflora Rmu_co8277499.1_g000001 Rmu_co8500999.1_g000001 Rmu_sc0000014.1_g000025 Rmu_sc0000103.1_g000003 Rmu_sc0000168.1_g000019 Rmu_sc0000283.1_g000006 Rmu_sc0000693.1_g000080 Rmu_sc0000997.1_g000005 Rmu_sc0001228.1_g000005 Rmu_sc0001231.1_g000023 Rmu_sc0002833.1_g000037 Rmu_sc0002869.1_g000015 Rmu_sc0003545.1_g000003 Rmu_sc0003693.1_g000028 Rmu_sc0004000.1_g000022 Rmu_sc0004454.1_g000007 Rmu_sc0004976.1_g000036 Rmu_sc0005014.1_g000013 Rmu_sc0005046.1_g000013 Rmu_sc0005063.1_g000009 Rmu_sc0005652.1_g000002 Rmu_sc0005697.1_g000008 Rmu_sc0006989.1_g000014 Rmu_sc0008957.1_g000003 Rmu_sc0011659.1_g000001 Rmu_sc0027477.1_g000001 Rmu_ssc0000387.1_g000021
rosa_roxburghii Rroxscaffold_1G00020860 Rroxscaffold_1G00035780 Rroxscaffold_1G00051370 Rroxscaffold_2G00101730 Rroxscaffold_3G00230130 Rroxscaffold_4G00280070 Rroxscaffold_4G00281160 Rroxscaffold_4G00318780 Rroxscaffold_5G00341570 Rroxscaffold_5G00341580 Rroxscaffold_7G00191230 Rroxscaffold_7G00195880 Rroxscaffold_7G00195890 Rroxscaffold_7G00209080 Rroxscaffold_7G00209090
rosa_rugosa Rorug02G0170400 Rorug03G0234500 Rorug04G0045200 Rorug07G0191000
rosa_samantha Rh1AG012200 Rh1AG012300 Rh1AG021700 Rh1AG033800 Rh1AG033900 Rh1AG048100 Rh1AG087000 Rh1AG168600 Rh1CG004600 Rh2BG192700 Rh2BG200800 Rh2BG310200 Rh2BG356900 Rh2BG377900 Rh2BG378000 Rh2CG356300 Rh2DG394800 Rh3AG199000 Rh3AG258700 Rh3AG258800 Rh3AG324400 Rh3BG202300 Rh3BG202400 Rh3BG228800 Rh3BG318800 Rh3BG360400 Rh3BG368300 Rh3BG373700 Rh4AG071400 Rh4AG153700 Rh4AG224300 Rh4AG224400 Rh4CG044000 Rh4CG077200 Rh4CG077300 Rh4CG238700 Rh4CG238800 Rh4CG238900 Rh5BG367100 Rh5BG379500 Rh5BG379600 Rh5BG396700 Rh5BG412900 Rh5DG427200 Rh6AG015200 Rh6AG015300 Rh6AG122800 Rh6AG175600 Rh6AG187700 Rh6AG187800 Rh6AG260800 Rh6AG355000 Rh6BG074900 Rh6BG102300 Rh7AG127400 Rh7AG157500 Rh7AG157600 Rh7AG212200 Rh7AG331400 Rh7AG412000 Rh7CG055400 Rh7CG131400 Rh7CG131500 Rh7CG224300 Rh7CG267100 Rh7CG348800
rosa_wichuraiana Rw0G009820 Rw1G000520 Rw1G008820 Rw4G014110 Rw4G019370 Rw4G022440 Rw6G010550 Rw7G001520 Rw7G018400 Rw7G025210 Rw7G027910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 739
AccB7I CCANNNNNTGG 1 cut(s) 631
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 642, 650
AfeI AGCGCT 1 cut(s) 446
AfiI CCNNNNNNNGG 4 cut(s) 458, 631, 665, 713
AgeI ACCGGT 1 cut(s) 357
AgsI TTSAA 1 cut(s) 809
AjnI CCWGG 3 cut(s) 472, 517, 712
AluBI AGCT 5 cut(s) 25, 90, 192, 239, 554
AluI AGCT 5 cut(s) 25, 90, 192, 239, 554
AlwI GGATC 2 cut(s) 642, 650
Aor51HI AGCGCT 1 cut(s) 446
AoxI GGCC 3 cut(s) 139, 342, 475
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsiGI ACCGGT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 415
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 3 cut(s) 28, 476, 731
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 3 cut(s) 392, 560, 680
AvaII GGWCC 2 cut(s) 28, 731
BanI GGYRCC 1 cut(s) 739
BbvCI CCTCAGC 1 cut(s) 555
BccI CCATC 4 cut(s) 46, 68, 299, 775
BciT130I CCWGG 3 cut(s) 474, 519, 714
BcnI CCSGG 1 cut(s) 330
BfaI CTAG 4 cut(s) 87, 171, 420, 762
BfoI RGCGCY 1 cut(s) 448
Bme1390I CCNGG 4 cut(s) 330, 474, 519, 714
Bme18I GGWCC 2 cut(s) 28, 731
BmgT120I GGNCC 3 cut(s) 28, 476, 731
BmiI GGNNCC 3 cut(s) 478, 718, 741
BmrFI CCNGG 4 cut(s) 330, 474, 519, 714
BmsI GCATC 2 cut(s) 637, 667
Bpu10I CCTNAGC 2 cut(s) 543, 555
BpuMI CCSGG 1 cut(s) 330
Bsa29I ATCGAT 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 472, 518
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 631, 665, 713
Bse118I RCCGGY 1 cut(s) 357
BseBI CCWGG 3 cut(s) 474, 519, 714
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 472, 518
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 4 cut(s) 458, 631, 665, 713
BseMII CTCAG 1 cut(s) 546
BshFI GGCC 3 cut(s) 141, 344, 477
BshNI GGYRCC 1 cut(s) 739
BshTI ACCGGT 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 675
BsiSI CCGG 2 cut(s) 329, 358
BslFI GGGAC 1 cut(s) 818
BslI CCNNNNNNNGG 4 cut(s) 458, 631, 665, 713
BsmFI GGGAC 1 cut(s) 818
BsnI GGCC 3 cut(s) 141, 344, 477
Bsp143I GATC 3 cut(s) 388, 634, 655
BspACI CCGC 1 cut(s) 227
BspANI GGCC 3 cut(s) 141, 344, 477
BspCNI CTCAG 1 cut(s) 547
BspDI ATCGAT 1 cut(s) 675
BspLI GGNNCC 3 cut(s) 478, 718, 741
BspPI GGATC 2 cut(s) 642, 650
BspT107I GGYRCC 1 cut(s) 739
BsrFI RCCGGY 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 472, 518
BssMI GATC 3 cut(s) 388, 634, 655
Bst2UI CCWGG 3 cut(s) 474, 519, 714
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 97, 543, 555
BstF5I GGATG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 448
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 391, 637, 658
BstMBI GATC 3 cut(s) 388, 634, 655
BstMWI GCNNNNNNNGC 2 cut(s) 245, 350
BstNI CCWGG 3 cut(s) 474, 519, 714
BstSCI CCNGG 4 cut(s) 328, 472, 517, 712
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 3 cut(s) 141, 344, 477
BsuTUI ATCGAT 1 cut(s) 675
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 447
Cfr10I RCCGGY 1 cut(s) 357
Cfr13I GGNCC 3 cut(s) 28, 476, 731
ClaI ATCGAT 1 cut(s) 675
CspAI ACCGGT 1 cut(s) 357
CviAII CATG 6 cut(s) 161, 218, 244, 310, 569, 837
DdeI CTNAG 3 cut(s) 97, 543, 555
DpnI GATC 3 cut(s) 390, 636, 657
DpnII GATC 3 cut(s) 388, 634, 655
Eco32I GATATC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 28, 731
Eco47III AGCGCT 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 472, 517, 712
EcoRV GATATC 1 cut(s) 673
FaeI CATG 6 cut(s) 164, 221, 247, 313, 572, 840
FaqI GGGAC 1 cut(s) 818
FatI CATG 6 cut(s) 160, 217, 243, 309, 568, 836
FokI GGATG 1 cut(s) 64
FspBI CTAG 4 cut(s) 87, 171, 420, 762
GlaI GCGC 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 448
HaeIII GGCC 3 cut(s) 141, 344, 477
HapII CCGG 2 cut(s) 329, 358
HhaI GCGC 1 cut(s) 447
Hin1II CATG 6 cut(s) 164, 221, 247, 313, 572, 840
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 2 cut(s) 64, 700
HindII GTYRAC 2 cut(s) 64, 700
HinfI GANTC 3 cut(s) 617, 745, 809
HpaI GTTAAC 2 cut(s) 64, 700
HpaII CCGG 2 cut(s) 329, 358
HphI GGTGA 3 cut(s) 392, 560, 680
Hpy166II GTNNAC 3 cut(s) 64, 80, 700
Hpy188I TCNGA 4 cut(s) 364, 487, 533, 616
Hpy188III TCNNGA 2 cut(s) 16, 205
Hpy8I GTNNAC 3 cut(s) 64, 80, 700
HpyCH4IV ACGT 2 cut(s) 111, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 350
HpyF3I CTNAG 3 cut(s) 97, 543, 555
HpySE526I ACGT 2 cut(s) 111, 770
Hsp92II CATG 6 cut(s) 164, 221, 247, 313, 572, 840
HspAI GCGC 1 cut(s) 445
KspAI GTTAAC 2 cut(s) 64, 700
Kzo9I GATC 3 cut(s) 388, 634, 655
LmnI GCTCC 1 cut(s) 214
LweI GCATC 2 cut(s) 637, 667
MaeI CTAG 4 cut(s) 87, 171, 420, 762
MaeII ACGT 2 cut(s) 111, 770
MaeIII GTNAC 2 cut(s) 380, 791
MalI GATC 3 cut(s) 390, 636, 657
MboI GATC 3 cut(s) 388, 634, 655
MboII GAAGA 2 cut(s) 186, 506
MluCI AATT 2 cut(s) 411, 481
MlyI GAGTC 1 cut(s) 754
MmeI TCCRAC 1 cut(s) 753
MnlI CCTC 9 cut(s) 312, 419, 431, 550, 622, 622, 631, 730, 826
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 3 cut(s) 63, 339, 699
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 2 cut(s) 329, 358
MspR9I CCNGG 4 cut(s) 330, 474, 519, 714
MvaI CCWGG 3 cut(s) 474, 519, 714
MwoI GCNNNNNNNGC 2 cut(s) 245, 350
NciI CCSGG 1 cut(s) 330
NdeII GATC 3 cut(s) 388, 634, 655
NlaIII CATG 6 cut(s) 164, 221, 247, 313, 572, 840
NlaIV GGNNCC 3 cut(s) 478, 718, 741
NmuCI GTSAC 2 cut(s) 380, 791
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 617, 809
PflMI CCANNNNNTGG 1 cut(s) 631
PinAI ACCGGT 1 cut(s) 357
PleI GAGTC 1 cut(s) 753
PpsI GAGTC 1 cut(s) 753
Psp6I CCWGG 3 cut(s) 472, 517, 712
PspGI CCWGG 3 cut(s) 472, 517, 712
PspN4I GGNNCC 3 cut(s) 478, 718, 741
PspPI GGNCC 3 cut(s) 28, 476, 731
PvuII CAGCTG 1 cut(s) 239
SaqAI TTAA 3 cut(s) 63, 339, 699
Sau3AI GATC 3 cut(s) 388, 634, 655
Sau96I GGNCC 3 cut(s) 28, 476, 731
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 4 cut(s) 330, 474, 519, 714
SfaNI GCATC 2 cut(s) 637, 667
SinI GGWCC 2 cut(s) 28, 731
Sse9I AATT 2 cut(s) 411, 481
SsiI CCGC 1 cut(s) 227
SspI AATATT 1 cut(s) 805
SspMI CTAG 4 cut(s) 87, 171, 420, 762
StyD4I CCNGG 4 cut(s) 328, 472, 517, 712
TaiI ACGT 2 cut(s) 114, 773
TaqI TCGA 2 cut(s) 204, 675
TaqII GACCGA 1 cut(s) 508
TasI AATT 2 cut(s) 411, 481
TfiI GAWTC 2 cut(s) 617, 809
Tru1I TTAA 3 cut(s) 63, 339, 699
Tru9I TTAA 3 cut(s) 63, 339, 699
TseFI GTSAC 2 cut(s) 380, 791
Tsp45I GTSAC 2 cut(s) 380, 791
TspDTI ATGAA 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 28, 731
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 4 cut(s) 87, 171, 420, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.